G203385


Basic Information

Item Value
gene id G203385
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1110529 ~ 1110847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240861
GATTGTTGTATACTGGGATTTGTGAATTATTAGGAGGTAAGGGAGACATCTCACTCTCTTCATTAAAGTAAAATCTCCCCTACCAATGTAAAGACAAAATCCGGTAAGTTCTTAAAATTAATATACTATATCATTTGCAAAAATAGGTTTCTCCACCCTTGTCAGAAAGAGGCACATAAAGTGCACTCTAAATGCCCCTTACAACAGGATGTACCATTGCTTCCCTATTGAAACTACCTCTAGTTTGACTCCTATGTTACATatttaatcagtgtgatgagtttctgaaataaaatctggATTAGTCTCGTCATTTCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240861 True 319 lncRNA 0.35 1 1110529 1110847

Neighbor

gene id symbol gene type direction distance location
LOC113528076 NA coding upstream 391 1078439 ~ 1110138 (+)
LOC113528077 NA coding upstream 68079 1037151 ~ 1042450 (+)
elob tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960 coding upstream 76314 1021926 ~ 1034215 (+)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding upstream 95784 1000089 ~ 1014745 (+)
smg1 smg1,LOC107729485 coding upstream 112844 941020 ~ 997685 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding downstream 142680 1253527 ~ 1266121 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding downstream 213253 1324100 ~ 1345037 (+)
shank1 shank1,LOC108427331,LOC107732841 coding downstream 290961 1401808 ~ 1494018 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding downstream 394031 1504878 ~ 1531986 (+)
med25 med25 coding downstream 520225 1631072 ~ 1658296 (+)
LOC117598762 NA non-coding upstream 32103 1061190 ~ 1078426 (+)
G203327 NA non-coding upstream 50008 1058679 ~ 1060521 (+)
G203357 NA non-coding upstream 226163 817391 ~ 884366 (+)
G203339 NA non-coding upstream 366789 741832 ~ 743740 (+)
G203321 NA non-coding upstream 371802 738339 ~ 738727 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 198550 1309397 ~ 1312989 (+)
G203647 NA non-coding downstream 251536 1362383 ~ 1441015 (+)
G203660 NA non-coding downstream 336142 1446989 ~ 1500793 (+)
G203662 NA non-coding downstream 411379 1522226 ~ 1533045 (+)
G203672 NA non-coding downstream 454509 1565356 ~ 1566629 (+)
armc5 armc5 other upstream 54195 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 304184 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 336279 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 377639 726729 ~ 732890 (+)
rnf25 rnf25 other upstream 393510 707738 ~ 717019 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 109647 1220494 ~ 1237202 (+)
kmt5c LOC108280634 other downstream 242482 1353329 ~ 1361460 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 450677 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 772205 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 806358 1917205 ~ 1987915 (+)

Expression


Co-expression Network