LOC117598978


Basic Information

Item Value
gene id LOC117598978
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 739668 ~ 750458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240994
CTCAGACGGTCTGCGTTCTTGCAGCCGCGTAAATCCGATCAGCGGATTGTTTCCGAGGTAAAAAAGACCTGTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAAGGAGTTCCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGAAGGTTGTCAACAGCAGACTCCTCGAGATGCTCGTTAGAAGACGCGCAGAGTGCCGTAAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGGAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGCCAAAAAACCAAGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGTGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCT
>XM_034310157.1
TGTCAGAGAAGCAGAATCTGCCAAAAAACCAAGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGCGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTCCTGCCTTCACAATTCCCAAAGGAACGCCACACGGAAGCGCATCTCAGGAAAGTGGCGTCCGCGTTAAATCTGCAGGTCGTTTCTACCGCTTCTGAGATTTCCCGAACTGTTAGCTCCACTGTGCAGCAGTTTATAGACGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAGGAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGAAGATGAAAGGACAGACGCCAGCAGCACAGTCAGAGAGGGATCAGGATCGTGTCACTCCCATCTACATCAGCGAGGATGGAAGTAGGAAAGATTTGTGTTCCAGCACAGAGTCGTCACCGACGGTATCAGTAGATCTTTTTCAAGTCACTGCTGAGATCGTGAACAGGGTGATCAGTGGAATTGCTAGTGAGATCGGACTAATGGAAAATGGATCGGAAGCTCAGATGAGTGATGCTGATGCTCGCTCAGCTTCCTACCCAAAGAACTCTGACGTTTTCACGAAGCTCCGAAGTCTTATTGGAGTCAGAGATAAAAGCAGACAGTCGTGCTCGTGCCTGAAGaacgcagcagcagcagcagtgactgATGCTAAGAGCCTCGTGTCCATCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTTCACTGAGGAGCTTATTGCGAAGAACGCAGATTTATTTCTGCGTGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCCTCTCGGCGCAGACGGTCTGCATTCTTGCAGCCGCGTAAATCCGATCAGCGGATTGTTTCCGAGGTAAAAAAGACCTGTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAATCAGCTTCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGAAGGTTGTCAACAGCAGACTCCTCGAGATGCTCGTTAGAAGACGTGCAGAGTGCCGTAAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGGAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGCCAAAAAACCAAGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGCGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTCCTGCCTTCACAATTCCCAAAGGAACGCCACACGGAAGCGCAGCTCAGGAAAGTGGCGTCCGCTTTAAATCTGCAGGTCGTTTCTACCGCTTCTGAGATTTCCCAAACTGTTAGCTCCACTGTGCAGCAGTTTATAGACGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAGGAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGAAGATGAAAGGACAGAAGCGTCAGCACAGTCAGAGAGGGATCAGGATCGTGTCACTCCCATCTACATCAGCGAGGATGGAAGTAGGAAAGATTTGTGTTCCAGCACAGAGTCGTCACCGACGGTATCAGTAGATCTTTTTCAAGTCACTGCTGAGATCGTGAACAGGGTGATCAGTGGAATTGCTAGTGAGATCGGAATAATGGAAAATGGATCGGAAGCTCAGATGAGTGATGCTGATGCTCGCTCAGCTTCCTACCCAAAGAACTCTGACGTTTTCGCGAAGCTCCGAAGTCTTATTGGAGTCAGAGATAAAAGCAGACAGTCGTGCTCGTGCCTGAAGaacgcagcagcagcagcagtgactgATGCTAAGAGCCTCGTGTCCATCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTTCACTGAGGAGCTGATTGCGAAGAACGCAGATTTATTTCTGCGTGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCCTCTCGGCTCAGACGGTCTGCGTTCTTGCAGCCGCGTAAATCCGATCAGCGGATTGTTTCCGAGGTAAAAAAGACCTGTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAAGGAGTTCCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGAAGGTTGTCAACAGCAGACTCCTCGAGATGCTCGTTAGAAGACGTGCAGAGTGCCGTCAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGAAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGCCAAAAAACCAAGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTTCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGCGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTCCTGCCTTCACAATTCCCAAAGGAACGCCACACGGAAGCGCAGCTCAGGAAAGTGGCGTCCGCGTTAAATCTGCAGGTCGTTTCTACAGCTTCTGAGATTTCCCGAACTGTTAGCTCCACTGTGCAGCAGTTTATAGACGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAGGAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGACGATGAAAGGACAGACGCGTCAGCACAGTCAGAGAGGGATCAGGATCGTGTCACTCCCATCTACATCAGCGAGGATGGAAGTAGGAAAGATTCGTGTTCCAGCACAGAGTCGCCACTGACGGTATCAGTAGATCTTGTTCAAGTCACTGCTGAGATCGTGAACAGGGTGATCAGTGGAATTGCTAGTGAGATCGGACTAATGGAAAATGGATCGGAAGCTCAGATGAGTGATGCTGATGCTCGCTCAGCTTCCTACCCAAAGAACTCTGGCGTTTTAGCAGAAGCTCGAAGTCTTATTGGAGTCAGAGATAAAAGGAGACAGTCGTGCTCGTGCCTGAagaacacagcagcagcagcagtgactgATGCTAAGAGCCTGGTGTCCATCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTTCACTGAGGAGCTTATTGCGAAGAACGCAGATTTATTTCTGCGTGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCCTCTCGGCGCAGACGGTCTGCATTCTTGCAGCCGCGTAAATCCGATCAGCGGATTGTTTCCGAGGTAAAAAAGACCTGTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAATCAGCTTCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGAAGGTTGTCAACAGCAGACTCCTCGAGATGCTCGTTAGAAGACGCGCAGAGTGCCGTAAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGGAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGCCAAAAAACCAAGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGTGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGCCACACGGAAGCGCATCTCAGGAAAGTGGCGTCCGCGTTAAATCTGCAGGTCGTTTCTACCGCTTCTGAGATTTCCCAAACTGTTAGCTCCACTGTGCAGCAGTTTATAGACGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAGGAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGACGATGAAAGGACAGACGCGTCAGCACAGTCAGAGAGGGATCAGGATCGTGTCACTCCCATCTACATCAGCGAGGATGGCATGGTTCATGAACTAACCGAGCTGGAGGATCTTTCTCTGGAGGAGATGATACATCAACGATCACGTGCTATAACGGATGTAATAGCAAATCTCCTCCTGAGGAACGTGGATAGGGCAGGAGATGTTGGCCAGTGTTCATCAGATTCTGTTCCAGGGAGAGGGAACAACATGTTACGCTCCAACCAGTTTCCTTCTGAGTGCGTTTACACGTTTACAGAGGAGTCCATCAAGGCTGTAGTGCAGAATGCGCTAAACGCCGGGCCGAGCGCAGGAGACGAAGCTCAGGAAAGCAGCTTCGTGGCCAAATCGACCGGTTGTCCGTTTGCTACGGCGCTCGCACGTGAAATCGAGGAGGCAGCCGTGGAGGAGACTCGGGAACACCTGAACGCCACTGATCAGCAGAATCGACCCGGCCGGAACGGAAACGTTCCTGGAAGCGATGGTTGTTCCTCACTTCCAGCAGCTGAGGatcaggagaagaagaagaggctCGGATTTCACTTCATTCTGAGGAGGAACGGGAGCATGATCAGACGTGGCGTTAAGTGTCCCAAGAAGTCGAAGAAGAAGCGGAGCAGAGTTCCTCTGACGAGCGATGACCAGCCGACCCCTTCCACCTCCGCAAATCTTCACAACTCTTCACACAGAGAATCGAAGGTCTCGGGGTCGGTCTTCAAGAACGCTCGCAGAAGGCTGGGCAGGATCTTCTCCAACATCTCCAAGTCCTTCACCGGCTGCTTCAACTCTGAAACCGCTCCGTAAACTCGTCAGCGTCGGCCTGAGCCCGGTGACCGTTAACCgagaaacaaacataaataatctaaacaaacaaacaaacaaccctaaacaaacaaacaaacaaacaaaaaaaaacataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240994 False 614 TUCP 0.50 2 741397 743393
XM_034310157.1 True 5665 mRNA 0.50 4 739668 750458

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.5 NA coding downstream 95082 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 100461 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 108957 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 125482 611190 ~ 614186 (-)
rcn3 rcn3 coding downstream 222718 507370 ~ 516950 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding upstream 169549 920007 ~ 931906 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 305912 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 361051 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 370708 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 393487 1143945 ~ 1148157 (-)
G203456 NA non-coding downstream 923 728811 ~ 738745 (-)
G203471 NA non-coding downstream 45782 693499 ~ 693886 (-)
G203425 NA non-coding downstream 70179 665538 ~ 669489 (-)
LOC117598763 NA non-coding downstream 172870 551404 ~ 566798 (-)
G203271 NA non-coding downstream 189957 549463 ~ 549711 (-)
G203499 NA non-coding upstream 14993 765451 ~ 766214 (-)
G203502 NA non-coding upstream 26886 777344 ~ 805841 (-)
G203504 NA non-coding upstream 28456 778914 ~ 800162 (-)
G203510 hsd3b7 non-coding upstream 41499 791957 ~ 849865 (-)
G203513 NA non-coding upstream 67112 817570 ~ 884412 (-)
G203254 NA other downstream 249937 486222 ~ 489731 (-)
G203154 NA other downstream 406024 331541 ~ 333644 (-)
G203170 NA other downstream 577084 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 636555 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 685393 26642 ~ 54275 (-)
G203544 NA other upstream 159659 910117 ~ 911228 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 197272 947730 ~ 1066820 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 376226 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 515204 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1240715 1991173 ~ 2013251 (-)

Expression


Co-expression Network