LOC117598979


Basic Information

Item Value
gene id LOC117598979
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 750063 ~ 753822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240999
CCTGACTGGAGCTCTGAGAATAATCTGAGAGaaatgacaattaaaaaaaaaaaaattaaatcaacattttcctgcataaatatcagtttttatatgtaaataaaaatgagaataatgaaataatattaaaatgctaatgatGCTAAGCTGCTGCTGTTAAATCAGGTCAGTGTGAGAGACAAAATGGCGGACACGAACACATTCTGCTCTATTTACACAATATCACCACAACACTGAAATAAGATTTACGCGCTGATTATTTCATTTTGCTCCCATTTTGaccttcactttaaaaacacaaacaacaacaacaacaacaacaacatttttagCATCCTTGCTCAGGGCTTCATTCAAACCAGCAACATTAATTAGCAAATCCTGGCTAGTTCTTACCACTTGACGCCATGACTGATGTTTTTACTGTAAAAGTCTGTAAAAGCGACGTTTTATTAAAGTGATTTGATGATTTTAAAGCTAATATAAAGTTTGTTGTTAACAGCGTCCCTGCAGCAATAAACCGTCTCGCgcttcagcagcactgagctGCACAGGACACAGTGGAGCTgctacgtgattggctgatgctgCAACAAAGCAGTAAGGTGATTGGCTCCCGCGCCAAATGATTGACACTGGGCCCGCCTCCGATACGGCTCAgttataaaaaaggaaaatgcagCTTTAGCTAAAGCGGAATTAATTAACGCTTTACACAGAAGCATGAAATGatcacatgatgatgatgatgatgatgatgatgcgcTTCATCTGctgcagatagagagagaaaaataaacacatccaAACAAGTCTTTaagtttattctgtttaattcactgaagaggagaaaaaaatcatcatcatcatcatcatcatcatcttttagAATTTAGAACGTAAAGCCGTAAGAGATGGGGGACTGTGACGTCACAAGAGGGGGCTGTGGCGTCACAGGAGGAGAAGAGACAAAAACCCTGATTTCAGGTGTTTAGTTCAGATTCTGTATTTTACAGACCACACGCCAGagAAAGCGACCCGAGAGAAACTACTGGATTCATATCCAAGTGATTCAAAGGTGAGTCGAGTTCatgtgaatcagtgaatcagtgaatcagtttgAACATGAACAGGATGTTGTCAGGGATTCATTTGATTCTGGGGCTGAAACAGGATGGGTGCTAATATTTATGCTCGCTGTTGTAGTTATTAAAGACTCTGCTAGGATTTAATTTGAACTTTG
>XM_034310158.1
CGAGTTCatgtgaatcagtgaatcagtgaatcagtttgAACATGAACAGGATGTTGTCAGGGATTCATTTGATTCTGGGGCTGAAACAGGATGGGTGCTAATATTTATGCTCGCTGTTGTAGTTATTAAAGACTCTGCTAGGATTTAATTTGAACTTTGATGATCAAAATGCTAAAgttaaagcactgaaactgctgTGAACTCCATGTGCTCTGTACAGTTgagtgagaagaagagaaggacTCAGAACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACTTTGTTCTTCATCAGTGTGTTGGATTACCGCCGGAGACGACTGATTTCGTTCAGATGCTCATCGTTCATATAAAAACTGTGCTGCTGCAGCTGATCCGGAGAATCCTGGCATCAGGAGGAAGGGTGGAACGAACAAGGACGACGTCTTCTGAGAATGCTTCATCACCCGCAGAAGATCAGACCTCACAGCGAGATGATGTCAGCGGCGCAGGCACTAGCGAGATATGTAAAAACATCTTGACTCTTTATCAGTCTGACAATTTTGACAGAAGCGAAGGAGATAAAACTTTAGGAAAGTCGCTAAAGTCCGATCTCAGCAGGTCACACACTAATGAGATATCTGATAAGCTTGTGATTCTGTATCAGTCTGATGATTTCGACAGACCTGAAGGAGAGAAAACTTCAGGAACATCACTAAAGTCTCACCAGAAGGACCAAGGAATGTTCGCCTCTGGACAGAAGCAAGCAATTTCCGAGAAAAGGAAGTTGTTCTTGGAATCTGCCGCTGATGAGCGGTTCCTTGATAAAGTCACTCAGGTTGAGAGTGATATCCCAGAGAAGCGGTTACGTTCACACATTTCCACAGGTTTATCGAGTGGGAAAGATTCGTGTTCCAGCACAGAGTCGTCACTGACGGCGTCAGTAGATCTGGAACAAGTCACTGCTGAGATCGTGAACAGGGTGATCAGTGGAATTGCTAGCGAGATCGGAATAGCCGACATGGAAAACGGATCGGAAGCTCGGGTAGGAAAAGCTCAGATGAGTGATGCTGATGCTCACTCAGCTTCCTACTCAAAGAACTTCTCCGACGTTTTCGCGAAGCTCCGAAGTCTTATTGGAGTCAGAGATGAAAGGAGACAGTCGTGCTCGTGCCTGAAGaacgcagcagcagcagcagtgactgATGCTAAGAGCCTGGTGTCCATGAGTGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTTCACTGAGGAGCTGATTGCGAAGAACGCAGATTTATTTCTGCGTGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCGTCTCGGCGCAGACGGTCTGCGTTCTTGCAGCCGCGTAAATCCGATCAGCGGATTGTTTCCGAGGTAAAAAAGACCTGTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAATCAGCTTCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGAAGGTTGTCAACAGCAGACTCCTCGAGATGCTCGTTAGAAGACGCCGCAGAGTGCCGTCAGTACCGCAGATTCGCTTCAGAAGCAGAATCTGCCAAAAAACCAAGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGCGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTCGTTTCTACCGCTTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240999 False 1243 lncRNA 0.39 2 752085 753822
XM_034310158.1 True 1846 mRNA 0.48 4 750063 752243

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.5 NA coding downstream 105477 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 110856 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 119352 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 135877 611190 ~ 614186 (-)
rcn3 rcn3 coding downstream 233113 507370 ~ 516950 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding upstream 166185 920007 ~ 931906 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 302548 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 357687 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 367344 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 390123 1143945 ~ 1148157 (-)
G203486 NA non-coding downstream 4222 737869 ~ 745841 (-)
G203456 NA non-coding downstream 11318 728811 ~ 738745 (-)
G203471 NA non-coding downstream 56177 693499 ~ 693886 (-)
G203425 NA non-coding downstream 80574 665538 ~ 669489 (-)
LOC117598763 NA non-coding downstream 183265 551404 ~ 566798 (-)
G203499 NA non-coding upstream 11629 765451 ~ 766214 (-)
G203502 NA non-coding upstream 23522 777344 ~ 805841 (-)
G203504 NA non-coding upstream 25092 778914 ~ 800162 (-)
G203510 hsd3b7 non-coding upstream 38135 791957 ~ 849865 (-)
G203513 NA non-coding upstream 63748 817570 ~ 884412 (-)
G203254 NA other downstream 260332 486222 ~ 489731 (-)
G203154 NA other downstream 416419 331541 ~ 333644 (-)
G203170 NA other downstream 587479 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 646950 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 695788 26642 ~ 54275 (-)
G203544 NA other upstream 156295 910117 ~ 911228 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 193908 947730 ~ 1066820 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 372862 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 511840 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1237351 1991173 ~ 2013251 (-)

Expression


Co-expression Network