G203510 (hsd3b7)


Basic Information

Item Value
gene id G203510
gene name hsd3b7
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 791957 ~ 849865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241024
atgatttaaactatcttgagcatttttttttgccacgtcaaacaaatgacaaaaaaaagaagaatttcaaaTCAAATTATTAGAAGTGAAGTGATTTAATTAggcagatggagagaaagaggtaGGAAGAGTTTTTGTCTTTCTTGTGTTAAATATGTGAAAAGTGTAAATGCCGTCTCAGATACAGAACCTATAGGGTTAATGTCTATTATAAACACACGGATTAATGCTAACACGTGAGTAGGTCAAAGAAACATTAGCAAAAGTAAAATGATGCTTGGAGTGTAAATCGAAACATCTGAATTCTCTAAAATCACCTGTTAATAACGAGTCACTCTGAGAGGCTTCTCTATAttagcaataaaaaataaaatagtaataaattcaGTTTACAAAAATAGCTTTGCCctggtgacatttttttttctttagatttaGGTGTTGCTCAGGGGAATGTGTctgcccatttttttttattattaagtacGGAATAAAACCTAACGCAgcacgctgttataggacaacgctcagcaccttctgaccaatcagaatccagaactcgaCAACACTGTGGGAAAACGTACTGCAACACGTCTTTTACAGACAAACGGGTCAAAACTAACTTCCTTCACAAGTCCACGACTTTAACGTCCTCTCCATCCTCTTTCTGTATGTTTCTTTGGCCTCACGTGTCTCTGGCTATGGAATATAAGGATAACGTGTAGACTGTGgattttatgattaaataaacGCACTAAGCAGCAGTGCGTCACGGTTAAAACATCCACCTGGTTAGAGTAATAAACCTGTCTGAAAGAGTTTGATtcgtttttaaataataatgactgATTAGTCCAGTGATTCTCTTAAAAATCTTGAcacccccctcacacacacacccacacacacacacacacacacacacacacacacacacgcacactgttTATGTTCCTGATGATTAAAAATGGGCGTGTCCACACAATTACAAATCCTTTGGAAGGAGGAAGATaattatattgttaatattataaaCGGGAAACAGAACGAAGACACTAAGACTCTAAGACACTAAGACACTAAGACACTACTCCCTTCCTGTTTCATTAGTCCCTGGCATTTGTGTCCactgtgtattatgtgtgtgtatgtatagaatgatgatgatgatgatgatctcaGTCTGTCTTCGTGTCTCCTGATGTTCCCCGTCCTCATGCGTCCTTGCCTCTGGTTTTCAGAGGGAACGTGTCCACCCACTTCTGCGTGCGAGCTTGGCACTGCTGCCAGTCGTACAGCGGGCGGTAGTTGAAGTGGCGCAGCGCCTTGTCCGTGCGCACGGTGAAGGAGGTGGTGGCGACGGCCAGCGTGTAGCGGTTCAGCAGCGGCGTGAAGTCGCGCACGGGCTTCAGCAGCCAGTGCAGCAGCTCGTTTAAGCACGCCAGCATCCAGAGCACACAGAGCGGCATGCGCAGCGAGCGGAAGTTAAACGCAGACAGGAACTGCATGTTGAATTCCTCGTAGCTCTTGTAGGGAGAATCGTCGTAGCAGAAGTACGCTTCACCCCCGAGTCGCTCGGGATGCTCGCGTAAAGCCTGCGCTGCCAGCGTGTGCATCCACGCTACGTTTC
>TU241026
atgatttaaactatcttgagcatttttttttgccacgtcaaacaaatgacaaaaaaaagaagaatttcaaaTCAAATTATTAGAAGTGAAGTGATTTAATTAggcagatggagagaaagaggtaGGAAGAGTTTTTGTCTTTCTTGTGTTAAATATGTGAAAAGTGTAAATGCCGTCTCAGATACAGAACCTATAGGGTTAATGTCTATTATAAACACACGGATTAATGCTAACACGTGAGTAGGTCAAAGAAACATTAGCAAAAGTAAAATGATGCTTGGAGTGTAAATCGAAACATCTGAATTCTCTAAAATCACCTGTTAATAACGAGTCACTCTGAGAGGCTTCTCTATAttagcaataaaaaataaaatagtaataaattcaGTTTACAAAAATAGCTTTGCCctggtgacatttttttttctttagatttaGGTGTTGCTCAGGGGAATGTGTctgcccatttttttttattattaagtacGGAATAAAACCTAACGCAgcacgctgttataggacaacgctcagcaccttctgaccaatcagaatccagaactcgaCAACACTGTGGGAAAACGTACTGCAACACGTCTTTTACAGACAAACGGGTCAAAACTAACTTCCTTCACAAGTCCACGACTTTAACGTCCTCTCCATCCTCTTTCTGTATGTTTCTTTGGCCTCACGTGTCTCTGGCTATGGAATATAAGGATAACGTGTAGACTGTGgattttatgattaaataaacGCACTAAGCAGCAGTGCGTCACGGTTAAAACATCCACCTGGTTAGAGTAATAAACCTGTCTGAAAGAGTTTGATtcgtttttaaataataatgactgATTAGTCCAGTGATTCTCTTAAAAATCTTGAcacccccctcacacacacacacacacacacacacacacacacacacacacacaccttttcagAAGGCGACTCGTCGGACGTCTCCTCTCCTTCACTGTCCAGATCGTAAGGTTTACGTGGTTTGGGTCTTTTTCTCCTCTGTACCGCGTCTCTCTCGGCTGCTCGGGTCTCCTCCGGCCGGCTCACGCTGTCGGACACTTTACC

Function

symbol description
hsd3b7 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Is expressed in several structures, including adenohypophysis; digestive system; lens; macrophage; and solid lens vesicle. Human ortholog(s) of this gene implicated in congenital bile acid synthesis defect 1 and intrahepatic cholestasis. Orthologous to human HSD3B7 (hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241024 True 1630 lncRNA 0.43 2 848204 849865
TU241026 False 1083 lncRNA 0.39 2 791957 849865

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.5 NA coding downstream 147371 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 152750 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 161246 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 177771 611190 ~ 614186 (-)
rcn3 rcn3 coding downstream 275007 507370 ~ 516950 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding upstream 70142 920007 ~ 931906 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 206505 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 261644 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 271301 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 294080 1143945 ~ 1148157 (-)
G203499 NA non-coding downstream 25743 765451 ~ 766214 (-)
G203458 NA non-coding downstream 28033 720089 ~ 763924 (-)
G203486 NA non-coding downstream 46116 737869 ~ 745841 (-)
G203456 NA non-coding downstream 53212 728811 ~ 738745 (-)
G203471 NA non-coding downstream 98071 693499 ~ 693886 (-)
G203543 NA non-coding upstream 53172 903037 ~ 903332 (-)
G203545 NA non-coding upstream 62091 911956 ~ 913561 (-)
LOC117598764 NA non-coding upstream 89643 939508 ~ 940343 (-)
G203564 smg1 non-coding upstream 104819 954684 ~ 956624 (-)
G203577 smg1 non-coding upstream 130507 980372 ~ 981015 (-)
LOC117598979 NA other downstream 38135 750063 ~ 753822 (-)
G203488 NA other downstream 41158 741244 ~ 750799 (-)
LOC117598978 NA other downstream 41499 739668 ~ 750458 (-)
G203254 NA other downstream 302226 486222 ~ 489731 (-)
G203154 NA other downstream 458313 331541 ~ 333644 (-)
G203544 NA other upstream 60252 910117 ~ 911228 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 97865 947730 ~ 1066820 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 276819 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 415797 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1141308 1991173 ~ 2013251 (-)

Expression


Co-expression Network