G203543


Basic Information

Item Value
gene id G203543
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 903037 ~ 903332 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241062
AGCGAGTGGAAAGCGTGACGAGAGGAACGAGGAGGTACCTGAACCCTGGCACATGTCAGTCTGCAGCAGCTGCTTGGCCCTGATGACGTCCACGTTGAGTCGTCCGGCGCTCGGCAAGTAGTTTAAGGACAGCAGCAGTTCCCCGAGTTCTACCTCGttctgtacaacacacacacacacacacacacacagagttataaAACAACACACGCTGACTGAGAACCGAGGCACAACATCCTTCTGACACTCATCAccattttaaaggaaaatattattattaatttgtccGAATTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241062 True 296 lncRNA 0.49 1 903037 903332

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.5 NA coding downstream 258451 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 263830 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 272326 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 288851 611190 ~ 614186 (-)
rcn3 rcn3 coding downstream 386087 507370 ~ 516950 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding upstream 16675 920007 ~ 931906 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 153038 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 208177 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 217834 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 240613 1143945 ~ 1148157 (-)
G203513 NA non-coding downstream 18625 817570 ~ 884412 (-)
G203510 hsd3b7 non-coding downstream 53172 791957 ~ 849865 (-)
G203502 NA non-coding downstream 97196 777344 ~ 805841 (-)
G203504 NA non-coding downstream 102875 778914 ~ 800162 (-)
G203499 NA non-coding downstream 136823 765451 ~ 766214 (-)
G203545 NA non-coding upstream 8624 911956 ~ 913561 (-)
LOC117598764 NA non-coding upstream 36176 939508 ~ 940343 (-)
G203564 smg1 non-coding upstream 51352 954684 ~ 956624 (-)
G203577 smg1 non-coding upstream 77040 980372 ~ 981015 (-)
G203559 LOC108280785 non-coding upstream 138159 1041491 ~ 1043647 (-)
LOC117598979 NA other downstream 149215 750063 ~ 753822 (-)
G203488 NA other downstream 152238 741244 ~ 750799 (-)
LOC117598978 NA other downstream 152579 739668 ~ 750458 (-)
G203254 NA other downstream 413306 486222 ~ 489731 (-)
G203154 NA other downstream 569393 331541 ~ 333644 (-)
G203544 NA other upstream 6785 910117 ~ 911228 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 44398 947730 ~ 1066820 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 223352 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 362330 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1087841 1991173 ~ 2013251 (-)

Expression


Co-expression Network