si:dkey-66i24.7 (LOC108280857,LOC108427346)


Basic Information

Item Value
gene id si:dkey-66i24.7
gene name LOC108280857,LOC108427346
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 947730 ~ 1066820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241084
GCCCTCGCGCTGATTTCTCTGAGGGGGAAGGTCGTTGTTATAATCATCGCCGCTGACAGTGAAAAGGTCATCGCTAGCGAACCCGGCGTTGTTAAACTCCACGGTACCAGCATCAACTCGTGTGagaaactttaataaaaaaattaaacatttaaaccacTCTGAGTGTCAGAATGGAGGTGATTGAGTCGATAGTCACGGACAGCATCGAGGTGGAAAATTCAACCAGCACAATTTCAACGTCGAAAACAGAGTTTGTGTGGACGTTGCAGGCCACGTGGCACTTGGTGCGCGTTCGTCTGGACATGGAGCCGGAGTTCGATCAGCCCGTGTGTAAGAAGAAGAGGCTGTGGGAGAGCGTGGCCGAGCGAGTGACGGCGAGGTTAAGAGCCGAGGGCTACGCGGACGTCCCGGCCCGAGCCTTCGAGTGCGACCTGAAGTGGAGGAACATGTTAGCGACGTACAGGAAGAACGCAGAGCGCGCTAAGCGCCTCGGAGCGCACGGCGTGCACTGGGAGTTCTTCAGGGCCATGCACGAGGTTCTCGGCCGCAGCTACGAGGAGATCGAGGCTCAGCGCAAAGCCAAGCTGAGCAACACCAAGCTGGGGAAAGCCATGGCGAGTAAACGCTACACGCCCATCCTGCCCACGCCCGCT
>TU241085
cacacacacacacacacacccctccacgTGATGTGGAAcgtgaattaaataaaaagttatgGTTTTCATTAATCTGCCGTTTCCCCACCACCTCTACACGACCACTCTGACTGAcgtgatgtacacacacacacacacacacacacacacacacacgcacacacacgcgcgctcAGACGTCCAAGGTTGCGAGGTGGAGGTTCGACGTTCGCgtttaaacacactgagtgtgtgaaggtCAGAGCGCAGATCGGCtagaattaaacattttttttcagcatcacaCAGAATCACGCTTCTTCtcgtccatcacacacactcattcctcaacacacacttccctatccaagcacacacacacacacacctcgggatccccctcccacacacacgcccacagcCACGCCCGCAGCCACGCCCGGATCCCCGCGGGTTTCACTGCACAGCCTGCTCGTTGGCCGTGCTGCCCGAGTCCTGCGGCTTCATCACGTCCGGCAGCTCCGGGGGACTGGAGAACGCGTCCACACGCAGCGGCTCGAACGCA
>TU241087
aatgtttttattttgaagacagaagttcagcaataaaaacaagATCAAAGCTGAAAAATAAGAAAGCTGtaaaatgtgttcatgtgtgtaaacatttttatttttatttaatgtcaccTTTCTTATGTTTATTTCTAGCTGTTGTAttgaattctttctttctctctctctctctctcttaaatgTACACCCTGGCTGTatttgtaaaacattaaaaaacttTACACACTGCTCTTCTTTACAAACAGCCAAGACCTGTTTCTACTGTTCTATCACCTCAACTTctgctttaattaaaatgcataaattaacCCTCAGGTAGTTTGGGTCAAGATGACTCTTGTACACTATACaatcaaaagtatgtgcacccctgaccttcacacccatatgtgcttcttcccgaaaagtttgaagcacacacttgtatagaacgtctctgtgtgctgtagcattacagtttcctttcactggaactaagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagctctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccaacatcagcgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagccacactccaacatctagtggaaagacttcgcagaagagtggagctcattataacagcaaacacacggggaataaatctggaatgagacgttcaataagcacatatgggtgagatggtcaggggtgcacatactttatAGCCATATCGTGTATATCTATCTATGAAACATGActcatgtatatttattaaaggtaccacaaagctgaatattttaaatatatatatatatatattcacagtATGTATCTGTTTGGTTCTTTATGTGTTCCTATACTTAGCAggattctatttatttatttaattttttaagagAGAGATACTACAGAGATGACTTTGAGGTCATTTTGCTGAGAGTAGCAACATGAAGTGAAAGTGTTCAAAATTAACCTGCGTTTGTAaatctgaaggaaaaaaaaaaagaaaaaaaaaagtgatgttaGTAATTTCCATTTCCTCCATCTCTTTATTTCTACTCCCAACtgcatgggaaaaaaatcatttgggCTTCATAGTCAGCACTCACTTTAATACCAGATGAGCAGAAATAAATGCTACAGGAGGGTGtattgcattaataataataataataataataatagtaataataataaactgagtAGTGAAGAGAACCAGAATTGTACAGATCACACTGCAGCACTTTGTTCATCAGGagtttcttctgtttttttttttttatttatttgaactgAAAGAGCAACGTGAGGAACGATTCTCaccactgagagaaagagagacgagTTCGTCGAGTTCATTCTCAAAAACATCACACCGAGAGACACAGTTCTTGTTTTTGGGGTGAACATGTCAGCACTGGTTCAAACGCAAACCAAAAGTCACCTGTTCATACACTTTACGGCTCAAACAGAGACGCCTTGTTCTTTACGGGACTGCAGAATGTAAGGCAAGCCATTCcttcacatgaacacacacacacacacacacacacacacacacaacacacgcacgcaacacacgcacgcacacgcacacacacgcgcgctcAGACGTCCAAGGTTGCGAGGTGGAGGTTCGACGTTCGCgtttaaacacactgagtgtgtgaaggtCAGAGCGCAGATCGGCtagaattaaacattttttttcagcatcacaCAGAATCACGCTTCTTCtcgtccatcacacacactcattcctcaacacacacttccctatccaagcacacacacacacacacctcgggatccccctcccacacacacgcccacagcCACGCCCGCAGCCACGCCCGGATCCCCGCGGGTTTCACTGCACAGCCTGCTCGTTGGCCGTGCTGCCCGAGTCCTGCGGCTTCATCACGTCCGGCAGCTCCGGGGGACTGGAGAACGCGTCCACACGCAGCGGCTCGAACGCA
>TU241088
aatgtttttattttgaagacagaagttcagcaataaaaacaagATCAAAGCTGAAAAATAAGAAAGCTGtaaaatgtgttcatgtgtgtaaacatttttatttttatttaatgtcaccTTTCTTATGTTTATTTCTAGCTGTTGTAttgaattctttctttctctctctctctctctcttaaatgTACACCCTGGCTGTatttgtaaaacattaaaaaacttTACACACTGCTCTTCTTTACAAACAGCCAAGACCTGTTTCTACTGTTCTATCACCTCAACTTctgctttaattaaaatgcataaattaacCCTCAGGTAGTTTGGGTCAAGATGACTCTTGTACACTATACaatcaaaagtatgtgcacccctgaccttcacacccatatgtgcttcttcccgaaaagtttgaagcacacacttgtatagaacgtctctgtgtgctgtagcattacagtttcctttcactggaactaagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagctctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccaacatcagcgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagccacactccaacatctagtggaaagacttcgcagaagagtggagctcattataacagcaaacacacggggaataaatctggaatgagacgttcaataagcacatatgggtgagatggtcaggggtgcacatactttatAGCCATATCGTGTATATCTATCTATGAAACATGActcatgtatatttattaaaggtaccacaaagctgaatattttaaatatatatatatatatattcacagtATGTATCTGTTTGGTTCTTTATGTGTTCCTATACTTAGCAggattctatttatttatttaattttttaagagAGAGATACTACAGAGATGACTTTGAGGTCATTTTGCTGAGAGTAGCAACATGAAGTGAAAGTGTTCAAAATTAACCTGCGTTTGTAaatctgaaggaaaaaaaaaaagaaaaaaaaaagtgatgttaGTAATTTCCATTTCCTCCATCTCTTTATTTCTACTCCCAACtgcatgggaaaaaaatcatttgggCTTCATAGTCAGCACTCACTTTAATACCAGATGAGCAGAAATAAATGCTACAGGAGGGTGtattgcattaataataataataataataataatagtaataataataaactgagtAGTGAAGAGAACCAGAATTGTACAGATCACACTGCAGCACTTTGTTCATCAGGagtttcttctgtttttttttttttatttatttgaactgAAAGAGCAACGTGAGGAACGATTCTCaccactgagagaaagagagacgagTTCGTCGAGTTCATTCTCAAAAACATCACACCGAGAGACACAGTTCTTGTTTTTGGGGTGAACATGTCAGCACTGGTTCAAACGCAAACCAAAAGTCACCTGTTCATACACTTTACGGCTCAAACAGAGACGCCTTGTTCTTTACGGGACTGCAGAATGTAAGGCAAGCCATTCcttcacatgaacacacacacacacacacacacacacacacacaacacacacacacattttaagcCCACACATTTACACTTCCCCTTtggtttaaatacaaaaaaaaaatgagggaaCTGAACACAAGGacatgttttagttttttttttttttttaaactaacactggataaattacacacacacaaaaaacaatatGATCAGCATcaacaaaaccacacacacacacacacacacacacccctccacgTGATGTGGAAcgtgaattaaataaaaagttatgGTTTTCATTAATCTGCCGTTTCCCCACCACCTCTACACGACCACTCTGACTGAcgtgatgtacacacacacacacacacacacacacacacacacacacacgcgcgctcAGACGTCCAAGGTTGCGAGGTGGAGGTTCGACGTTCGCgtttaaacacactgagtgtgtgaaggtCAGAGCGCAGATCGGCtagaattaaacattttttttcagcatcacaCAGAATCACGCTTCTTCtcgtccatcacacacactcattcctcaacacacacttccctatccaagcacacacacacacacacctcgggatccccctcccacacacacgcccacagcCACGCCCGCAGCCACGCCCGGATCCCCGCGGGTTTCACTGCACAGCCTGCTCGTTGGCCGTGCTGCCCGAGTCCTGCGGCTTCATCACGTCCGGCAGCTCCGGGGGACTGGAGAACGCGTCCACACGCAGCGGCTCGAACGCA
>TU241090
aatgtttttattttgaagacagaagttcagcaataaaaacaagATCAAAGCTGAAAAATAAGAAAGCTGtaaaatgtgttcatgtgtgtaaacatttttatttttatttaatgtcaccTTTCTTATGTTTATTTCTAGCTGTTGTAttgaattctttctttctctctctctctctctcttaaatgTACACCCTGGCTGTatttgtaaaacattaaaaaacttTACACACTGCTCTTCTTTACAAACAGCCAAGACCTGTTTCTACTGTTCTATCACCTCAACTTctgctttaattaaaatgcataaattaacCCTCAGGTAGTTTGGGTCAAGATGACTCTTGTACACTATACaatcaaaagtatgtgcacccctgaccttcacacccatatgtgcttcttcccgaaaagtttgaagcacacacttgtatagaacgtctctgtgtgctgtagcattacagtttcctttcactggaactaagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagctctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccaacatcagcgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagccacactccaacatctagtggaaagacttcgcagaagagtggagctcattataacagcaaacacacggggaataaatctggaatgagacgttcaataagcacatatgggtgagatggtcaggggtgcacatactttatAGCCATATCGTGTATATCTATCTATGAAACATGActcatgtatatttattaaaggtaccacaaagctgaatattttaaatatatatatatatatattcacagtATGTATCTGTTTGGTTCTTTATGTGTTCCTATACTTAGCAggattctatttatttatttaattttttaagagAGAGATACTACAGAGATGACTTTGAGGTCATTTTGCTGAGAGTAGCAACATGAAGTGAAAGTGTTCAAAATTAACCTGCGTTTGTAaatctgaaggaaaaaaaaaaagaaaaaaaaaagtgatgttaGTAATTTCCATTTCCTCCATCTCTTTATTTCTACTCCCAACtgcatgggaaaaaaatcatttgggCTTCATAGTCAGCACTCACTTTAATACCAGATGAGCAGAAATAAATGCTACAGGAGGGTGtattgcattaataataataataataataataatagtaataataataaactgagtAGTGAAGAGAACCAGAATTGTACAGATCACACTGCAGCACTTTGTTCATCAGGagtttcttctgtttttttttttttatttatttgaactgAAAGAGCAACGTGAGGAACGATTCTCaccactgagagaaagagagacgagTTCGTCGAGTTCATTCTCAAAAACATCACACCGAGAGACACAGTTCTTGTTTTTGGGGTGAACATGTCAGCACTGGTTCAAACGCAAACCAAAAGTCACCTGTTCATACACTTTACGGCTCAAACAGAGACGCCTTGTTCTTTACGGGACTGCAGAATGTAAGGCAAGCCATTCcttcacatgaacacacacacacacacacacacacacacacacaacacacacacacattttaagcCCACACATTTACACTTCCCCTTtggtttaaatacaaaaaaaaaatgagggaaCTGAACACAAGGacatgttttagttttttttttttttttaaactaacactggataaattacacacacacaaaaaacaatatGATCAGCATcaacaaaaccacacacacacacacacacacacacacacactatgagaggggtaaataaaaaatgatgtacAAAGTGGACGTGCAGCTCCATGAGACACACGTTTACGCCAAACTTGATCTTCCGTGCTCCGAAACACGCCTGATCCGACTCGACACCTAAATTATTAAGCCCTTCAGGAGTCGGCTCACGCGTGCTTCAGACTCCACCGTTAATCCCACGCTCGACGGCCAAAATAACAAGATCATGAATATTATTAAAGATAAtaaacactcacacagcacATACTGTTAATACAATTCGTCaacagcgccccacacacacacacacacacacacacacatacacacacacacacacacacacacacac
>XM_034309753.1
GAGGGGGAAGGTCGTTGTTATAATCATCGCCGCTGACAGTGAAAAGGTCATCGCTAGCGAACCCGGCGTTGTTAAACTCCACGGTACCAGCATCAACTCGTGTGagaaactttaataaaaaaattaaacatttaaaccacTCTGAGTGTCAGAATGGAGGTGATTGAGTCGATAGTCACGGACAGCATCGAGGTGGAAAATTCAACCAGCACAATTTCAACGTCGAAAACAGAGTTTGTGTGGACGTTGCAGGCCACGTGGCACTTGGTGCGCGTTCGTCTGGACATGGAGCCGGAGTTCGATCAGCCCGTGTGTAAGAAGAAGAGGCTGTGGGAGAGCGTGGCCGAGCGAGTGACGGCGAGGTTAAGAGCCGAGGGCTACGCGGACGTCCCGGCCCGAGCCTTCGAGTGCGACCTGAAGTGGAGGAACATGTTAGCGACGTACAGGAAGAACGCAGAGCGCGCTAAGCGCCTCGGAGCGCACGGCGTGCACTGGGAGTTCTTCAGGGCCATGCACGAGGTTCTCGGCCGCAGCTACGAGGAGATCGAGGCTCAGCGCAAAGCCAAGCTGAGCAACACCAAGCTGGGGAAAGCCATGGCGAGTAAACGCTACACGCCCATCCTGCCCACGCCCGCTCTCACGCCCCCCGccccaagccccgcccacagccCCACCCCAAGCCCCGCCCAGCCTCCCCAGGACGTTCTGCAGCTGTACCTGGAGCTCCAGGAGCGCAAGCTGAACATGTGGGCTCAGCAGAAAGCACTGGAGGAGAGGAAGATCGAAGCCATCAACAACCTGGCGCGTGCCATCAGCAGCCTGGCGCAGGACGCAGCGACCACGCCCAAAAACGCCGCCGTCTCAGACTCACTCGCTTCCCTTTCCTCTCAGCGTTAAACACTCAGACTCGTTTATTCCTTTATGGGTTTGGAATCACGACTCGGATCCTCAGCTCCAGTATTTTACTTCCTGATTCAGCTGctcaagagtgtgtgtgtgcgcgcgcgcgtgcgtgagagagagacacacacctCAAATAAATTCCAGGAAGAAATATCAGCTTGTGTAGTATTTCCAGAACATTCTAATAAATTATCAACTTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC102077857 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241084 False 656 TUCP 0.56 2 1044737 1046555
TU241085 False 544 lncRNA 0.56 3 1033889 1066820
TU241087 False 2118 lncRNA 0.42 2 1033889 1036631
TU241088 True 2419 lncRNA 0.41 3 1033889 1036631
TU241090 False 2234 lncRNA 0.39 3 947730 1036631
XM_034309753.1 False 1104 mRNA 0.56 2 1044269 1046535

Neighbor

gene id symbol gene type direction distance location
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 15824 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 303144 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 308523 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 317019 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 333544 611190 ~ 614186 (-)
LOC113528610 LOC108280679 coding upstream 44689 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 54346 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 77125 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 81775 1148595 ~ 1150039 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding upstream 109578 1176398 ~ 1178798 (-)
LOC117598764 NA non-coding downstream 7387 939508 ~ 940343 (-)
G203545 NA non-coding downstream 34169 911956 ~ 913561 (-)
G203543 NA non-coding downstream 44398 903037 ~ 903332 (-)
G203513 NA non-coding downstream 63318 817570 ~ 884412 (-)
G203510 hsd3b7 non-coding downstream 97865 791957 ~ 849865 (-)
G203609 NA non-coding upstream 44267 1111087 ~ 1111312 (-)
G203630 NA non-coding upstream 171344 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 388367 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 432200 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 440381 1507201 ~ 1527141 (-)
G203544 NA other downstream 36502 910117 ~ 911228 (-)
LOC117598979 NA other downstream 193908 750063 ~ 753822 (-)
G203488 NA other downstream 196931 741244 ~ 750799 (-)
LOC117598978 NA other downstream 197272 739668 ~ 750458 (-)
G203254 NA other downstream 457999 486222 ~ 489731 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 59864 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 198842 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 924353 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 999068 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 1045625 2112445 ~ 2195540 (-)

Expression


Co-expression Network