G203559 (LOC108280785)


Basic Information

Item Value
gene id G203559
gene name LOC108280785
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1041491 ~ 1043647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241093
tttttattcagtgttacagaaagtaaacattttatatttcacagtttgctgtaataaacatatacatttatatacaataataataaatacacgtTACCTCTGAACAAAAGAGGCGATTCAGATAGAAaacagagaattaaaaaaaagaaaagaaaaagggaataTTTTGCAAAATGCATTAATCCAGAAGTTTGAACAGATTATACTGGAAATGTGATGATGCGCACAGGAGGAAAGTTCTCTCATCCTCGGACTCGTCTttatgctgctttttttctccactaCGCCAAATTTCTGATGTCAAGaagtgcaaaaaataaacaacaacaataacacgtGACGGTGACGAGTCAAACTGagtcacactgacacacaaggAAATTTAAACACATCCTTTTATTAACCTTCCTGCTTTTCTGTTCTAAAgactaaaacacattttatttttttaaaaagtggaaaACTCAGAAAGCGGCGTTTTCGAAAGCGTTCCTGTACGACGGCGTGATTTTAAAGCGGTGCAGTTTCCCGTATTACAGATTTAATATCACATTTTCTATCTGTTGTGTATCGTTCAGGTTGCctaaaggtcagaggtcagacaCTCAGTGCACAGGAACAGCggggttttttttcctttttggttttaagtcatttttatttttgtagacattacataaaataaaagtatcatcaactcagttttttttaaatgtaagatTAAAAGGAACTGATGCTCACTGTGCATCAGAAATGACTTCAAGTATCGAGAGATGatattttttccttcatattttAACGATCATAAAGGTTGAGTGCTTTCGCTCACGTCTCTCAGGTTACTCCGTCCCCGACTCCAGAGCGCTGTACAGCAGATTAGCGACTGTTTCTCTCAGTTTAACTCCAGCTTCCTCTTTCGttccctccttctcctcctcctcttcctcttcatctgtcCTGGCGTCTTTCTCCACCTGCCCCTTGGTGACGTAGCCGGCGTGGAGCAGCGCGTTGTGCAGGATGCAGCAGGTCAGCACCACGGCTTCGGCCCTCTCGCACTTCCCCATGTCCAGATAGCGCAGTCTTCCGAAGCGCTCCTTCAGGTCGGCCACGGCCTGCTCCAGCCTCCTCAGGTGCGTCTCCACCGCTCTGTTGTAGAGGTTCTCCTGCGGGTTGCGTGCGGGATGGAACGGCGTGAGGATGTGCTGCGTGAGGGGATATCCCGCTCCGGCTAGCAGGCAGGTTCCGGGAGGCAGGAGCTCCAGCTGCTGCGCTAATCTCTGACTCAGAACACCACCTCGGTTCCTCTGAGAACCTCGGCTGACGCTGCAGTGGATGAAACGACCCTCGGCGTCGCACGCCAGCTCCAGGTTCAGCCACGAGTCCGGGTGACGCCGCTTCCTGAGCCGCTTGGCGTGAGGAACTTCGCTCTCCGTGTCCTGTTTGCTGGCGGGAAGCCGGATCGGGATACGGGTGTGGCCCAACACGCCCAACACTTTAGGGAGACCCTTCTGCTCGAGCTTCTCATCCCAACCCAGCCAGCTGGAGAAGTGGAGCAGGAGATCCGACGCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241093 True 1574 lncRNA 0.47 2 1041491 1043647

Neighbor

gene id symbol gene type direction distance location
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 109585 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 396905 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 402284 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 410780 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 427305 611190 ~ 614186 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 12723 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 67862 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 77519 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 100298 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 104948 1148595 ~ 1150039 (-)
G203577 smg1 non-coding downstream 60476 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 84867 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 101148 939508 ~ 940343 (-)
G203545 NA non-coding downstream 127930 911956 ~ 913561 (-)
G203543 NA non-coding downstream 138159 903037 ~ 903332 (-)
G203609 NA non-coding upstream 67440 1111087 ~ 1111312 (-)
G203630 NA non-coding upstream 194517 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 411540 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 455373 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 463554 1507201 ~ 1527141 (-)
G203544 NA other downstream 130263 910117 ~ 911228 (-)
LOC117598979 NA other downstream 287669 750063 ~ 753822 (-)
G203488 NA other downstream 290692 741244 ~ 750799 (-)
LOC117598978 NA other downstream 291033 739668 ~ 750458 (-)
G203254 NA other downstream 551760 486222 ~ 489731 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 83037 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 222015 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 947526 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 1022241 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 1068798 2112445 ~ 2195540 (-)

Expression


Co-expression Network