G203564 (smg1)


Basic Information

Item Value
gene id G203564
gene name smg1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 954684 ~ 956624 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241099
CTGACACAGCAGCTCCGGGGTGTCCAGGTTCTCCAGGATGGACTGGAGGCTgctcatcaccacCTGCATGACGGGCGAGAACGCTTTCTTCTCCCCTGCCGTCTCCAGAGCCTTGTACACGGCCACCAGGTAGAGCAGCTTCACCTCGTCCTTACTGCAGCTGCTGAACTTCACAAACATCCACTTGAAGATCTTCTCGGCTTCGTAGCTGAGGGCAGCGCAGAGCAAACCCAGGCAGCAGGCCGCTTCCTGTCGCAGCTCATGGAGGAG

Function

symbol description
smg1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in TORC1 signaling and negative regulation of macroautophagy. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and phosphorylation. Predicted to be part of TORC1 complex and TORC2 complex. Predicted to be active in nucleus. Orthologous to human SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241099 True 270 lncRNA 0.59 2 954684 956624

Neighbor

gene id symbol gene type direction distance location
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 22778 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 310098 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 315477 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 323973 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 340498 611190 ~ 614186 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 99746 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 154885 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 164542 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 187321 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 191971 1148595 ~ 1150039 (-)
LOC117598764 NA non-coding downstream 14341 939508 ~ 940343 (-)
G203545 NA non-coding downstream 41123 911956 ~ 913561 (-)
G203543 NA non-coding downstream 51352 903037 ~ 903332 (-)
G203513 NA non-coding downstream 70272 817570 ~ 884412 (-)
G203510 hsd3b7 non-coding downstream 104819 791957 ~ 849865 (-)
G203577 smg1 non-coding upstream 23748 980372 ~ 981015 (-)
G203559 LOC108280785 non-coding upstream 84867 1041491 ~ 1043647 (-)
G203609 NA non-coding upstream 154463 1111087 ~ 1111312 (-)
G203630 NA non-coding upstream 281540 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 498563 1455187 ~ 1457398 (-)
G203544 NA other downstream 43456 910117 ~ 911228 (-)
LOC117598979 NA other downstream 200862 750063 ~ 753822 (-)
G203488 NA other downstream 203885 741244 ~ 750799 (-)
LOC117598978 NA other downstream 204226 739668 ~ 750458 (-)
G203254 NA other downstream 464953 486222 ~ 489731 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 170060 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 309038 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1034549 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 1109264 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 1155821 2112445 ~ 2195540 (-)

Expression


Co-expression Network