LOC113528609 (LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734)


Basic Information

Item Value
gene id LOC113528609
gene name LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1126684 ~ 1130550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241160
CTGAAAGGTTCATTGAGAAGACAAATGTAAAGTGCACAGGTTATATCTGCTCATACACACGTCAAGggcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccaaacccccaactgctccccgggcgccgcagcaaaaaaaggctgcccactgctccgggtgtgttttcacggtgtgtgtgtgtgtgtgtgtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacttggccacaagtcacttcacttcacttcacttc
>XM_034309715.1
CTGAAAGGTTCATTGAGAAGACAAATGTAAAGTGCACAGGTTATATCTGCTCATACACACGTCAAGAAACAGAACACACCGCAAATCCACCATGGTTCAGACTCTTCTGATTTGGGCCGTCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTCCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAAGTGGCAGACAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACTAAAAAAGACAAGTTCAGCTTCACCAGCCAGACTGTCTCTTGTGGATACTACGGATACAGGGTTTCGAGCCGTCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTACAAGCTTATTGACGAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGACGAGGTGAAGATGTGTCTAGACGTGGAGGCTTCTGCCAGTACGGGAATATCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAGCAGGCCAAAGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTAATTGGTGGCTACACTCAGAGTACCGACCTCCTTTTCTCATCAAATAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTCAAGCCCCTTCACGAGTTGCTACCAGCAAAGAACCCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATTCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGACGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCATGTGACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTGACTCAGACAGATGCATTCGTCAAGATCCTCCTCAACGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCCGATGACAACTCGCCCAGTTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATAATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCGGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGACCAGTTGTGTTCTTTGTGCATCTATTGCATATTCTCATCATAATGTTTAAAGTAGAACAGGTGCACATAATATTGGCGTATTATTACTAAACCTTTCCTGCTCATGTGTGATGCCTTTTGCCTTTTTGAAAGCTTAATAAATGTCTCATGAAGCAAAA
>XM_034309716.1
gcgccgcagcaaaaaaaggctgcccactgctccggAAACAGAACACACCGCAAATCCACCATGGTTCAGACTCTTCTGATTTGGGCCGTCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTCCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAAGTGGCAGACAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACTAAAAAAGACAAGTTCAGCTTCACCAGCCAGACTGTCTCTTGTGGATACTACGGATACAGGGTTTCGAGCCGTCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTACAAGCTTATTGACGAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGACGAGGTGAAGATGTGTCTAGACGTGGAGGCTTCTGCCAGTACGGGAATATCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAGCAGGCCAAAGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTAATTGGTGGCTACACTCAGAGTACCGACCTCCTTTTCTCATCAAATAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTCAAGCCCCTTCACGAGTTGCTACCAGCAAAGAACCCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATTCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGACGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCATGTGACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTGACTCAGACAGATGCATTCGTCAAGATCCTCCTCAACGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCCGATGACAACTCGCCCAGTTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATAATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCGGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGACCAGTTGTGTTCTTTGTGCATCTATTGCATATTCTCATCATAATGTTTAAAGTAGAACAGGTGCACATAATATTGGCGTATTATTACTAAACCTTTCCTGCTCATGTGTGATGCCTTTTGCCTTTTTGAAAGCTTAATAAATGTCTCATGAAGCAAAA
>XM_034309717.1
gctccgggtgtgttttcacgAAACAGAACACACCGCAAATCCACCATGGTTCAGACTCTTCTGATTTGGGCCGTCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTCCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAAGTGGCAGACAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACTAAAAAAGACAAGTTCAGCTTCACCAGCCAGACTGTCTCTTGTGGATACTACGGATACAGGGTTTCGAGCCGTCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTACAAGCTTATTGACGAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGACGAGGTGAAGATGTGTCTAGACGTGGAGGCTTCTGCCAGTACGGGAATATCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAGCAGGCCAAAGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTAATTGGTGGCTACACTCAGAGTACCGACCTCCTTTTCTCATCAAATAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTCAAGCCCCTTCACGAGTTGCTACCAGCAAAGAACCCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATTCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGACGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCATGTGACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTGACTCAGACAGATGCATTCGTCAAGATCCTCCTCAACGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCCGATGACAACTCGCCCAGTTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATAATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCGGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGACCAGTTGTGTTCTTTGTGCATCTATTGCATATTCTCATCATAATGTTTAAAGTAGAACAGGTGCACATAATATTGGCGTATTATTACTAAACCTTTCCTGCTCATGTGTGATGCCTTTTGCCTTTTTGAAAGCTTAATAAATGTCTCATGAAGCAAAA
>XM_034309718.1
tctcccaccctcaataccacgactgagAAACAGAACACACCGCAAATCCACCATGGTTCAGACTCTTCTGATTTGGGCCGTCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTCCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAAGTGGCAGACAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACTAAAAAAGACAAGTTCAGCTTCACCAGCCAGACTGTCTCTTGTGGATACTACGGATACAGGGTTTCGAGCCGTCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTACAAGCTTATTGACGAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGACGAGGTGAAGATGTGTCTAGACGTGGAGGCTTCTGCCAGTACGGGAATATCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAGCAGGCCAAAGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTAATTGGTGGCTACACTCAGAGTACCGACCTCCTTTTCTCATCAAATAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTCAAGCCCCTTCACGAGTTGCTACCAGCAAAGAACCCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATTCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGACGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCATGTGACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTGACTCAGACAGATGCATTCGTCAAGATCCTCCTCAACGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCCGATGACAACTCGCCCAGTTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATAATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCGGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGACCAGTTGTGTTCTTTGTGCATCTATTGCATATTCTCATCATAATGTTTAAAGTAGAACAGGTGCACATAATATTGGCGTATTATTACTAAACCTTTCCTGCTCATGTGTGATGCCTTTTGCCTTTTTGAAAGCTTAATAAATGTCTCATGAAGCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241160 False 353 lncRNA 0.52 2 1129360 1130550
XM_034309715.1 True 2014 mRNA 0.49 5 1126684 1130550
XM_034309716.1 False 1983 mRNA 0.50 5 1126684 1129535
XM_034309717.1 False 1968 mRNA 0.49 5 1126684 1129507
XM_034309718.1 False 1975 mRNA 0.49 5 1126684 1129606

Neighbor

gene id symbol gene type direction distance location
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding downstream 592 1121166 ~ 1126092 (-)
LOC113528610 LOC108280679 coding downstream 6953 1111509 ~ 1119731 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding downstream 65005 1056370 ~ 1061679 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 194778 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 482098 642509 ~ 644586 (-)
LOC113528091 LOC108280723 coding upstream 13395 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 18045 1148595 ~ 1150039 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding upstream 45848 1176398 ~ 1178798 (-)
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding upstream 59906 1190456 ~ 1194184 (-)
LOC113528094 LOC108280689,LOC108280734 coding upstream 71878 1202428 ~ 1205204 (-)
G203609 NA non-coding downstream 15372 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 83037 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 145669 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 170060 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 186341 939508 ~ 940343 (-)
G203630 NA non-coding upstream 107614 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 324637 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 368470 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 376651 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 395113 1525663 ~ 1528233 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 59864 947730 ~ 1066820 (-)
G203544 NA other downstream 215456 910117 ~ 911228 (-)
LOC117598979 NA other downstream 372862 750063 ~ 753822 (-)
G203488 NA other downstream 375885 741244 ~ 750799 (-)
LOC117598978 NA other downstream 376226 739668 ~ 750458 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 135112 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 860623 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 935338 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 981895 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 1201126 2331676 ~ 2344912 (-)

Expression


Co-expression Network