G203733


Basic Information

Item Value
gene id G203733
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1499020 ~ 1500815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241307
GTTGGTAGTccttgtctttctgtttctcgcGTCGTTTGGAAGTGGAGCTGCTTTCTGTGTTTACAGCCTGgacACTGTGAACTCTTCCTCTGGAGGACTGAAGGTAACTGTGATGACGAGGTACAGGTGAAGACACTGATGGAACAAGATTTAATTTCTGGCTAGTTTATAAAATCAACCTGATAAATACACGGCCCATGAGTGTTTTGTATGTTGTATAATTTTAACTGAAGTGTATGTGATGTAACTCAATAAATTTCTCTTTTTGAATA
>TU241309
GTTGGTAGTccttgtctttctgtttctcgcGTCGTTTGGAAGTGGAGCTGCTTTCTGTGTTTACAGCCTGacACTGTGAACTCTTCCTCTGGAGGACTGAAGGTAACTGTGATGACGAGGTACAGGTGAAGACACTGATGGAACAAGATTTAATTTCTGGCTAGTTTATAAAATCAACCTGATAAATACACGGCCCATGAGTGTTTTGTATGTTGTATAATTTTAACTGAAGTGTATGTGATGTAACTCAATAAATTTCTCTTTTTGAATA

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0051597 response to methylmercury biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU241307 True 272 lncRNA 0.39 3 1499020 1500815
TU241309 False 271 lncRNA 0.39 3 1499020 1500815

Neighbor

gene id symbol gene type direction distance location
LOC113527946 LOC108280870,LOC103034911 coding downstream 182845 1309888 ~ 1316175 (-)
LOC113528189 NA coding downstream 192657 1302401 ~ 1306363 (-)
LOC113525779 NA coding downstream 204781 1282400 ~ 1294239 (-)
LOC113528234 NA coding downstream 219468 1268382 ~ 1279552 (-)
LOC113528093 LOC108280723 coding downstream 282454 1208175 ~ 1216566 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding upstream 266491 1767306 ~ 1812044 (-)
akt1s1 akt1s1,LOC107564011,LOC107680841 coding upstream 341174 1841989 ~ 1859709 (-)
aoc2 LOC108276610 coding upstream 724796 2225611 ~ 2233295 (-)
LOC113528224 LOC108276032 coding upstream 768856 2269671 ~ 2283303 (-)
LOC117598982 LOC108276075,LOC108276032 coding upstream 788602 2289417 ~ 2304449 (-)
G203739 NA non-coding downstream 41622 1455187 ~ 1457398 (-)
G203630 NA non-coding downstream 257831 1238164 ~ 1241189 (-)
G203609 NA non-coding downstream 387708 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 455373 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 518005 980372 ~ 981015 (-)
G203756 NA non-coding upstream 6386 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 24848 1525663 ~ 1528233 (-)
LOC117598750 NA non-coding upstream 217198 1718013 ~ 1718791 (-)
G204080 NA non-coding upstream 230186 1731001 ~ 1731200 (-)
G204084 NA non-coding upstream 234703 1735518 ~ 1735720 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 153849 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 368470 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 432200 947730 ~ 1066820 (-)
G203544 NA other downstream 587792 910117 ~ 911228 (-)
LOC117598979 NA other downstream 745198 750063 ~ 753822 (-)
LOC113527889 LOC108278777 other upstream 490358 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 565073 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 611630 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 830861 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 932334 2433149 ~ 2538111 (-)

Expression


Co-expression Network