G203898


Basic Information

Item Value
gene id G203898
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1856423 ~ 1871560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241499
ttttgtgtgtgtgtgtgtgtgtgtgtgtgatacgaCCCTTTATGTGatgtttctgcagtgtgtgctCGTTGTGTTGAATATAAAAGTCGTTGTGTGGATGTATTTTAGTTAACGTCTCTCTGACGCTGTGGTCTTTGTGTCATTGTGTAACTTGTAATGACACAATGGCCTCCTCATGCACATTTGCACGGCTTGGATTCTcgcattaaatatgaatataaatataaagatatatattttggtttgtttttaacCTCGACTACATTCACTCCACATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241499 True 278 lncRNA 0.37 2 1856423 1871560

Neighbor

gene id symbol gene type direction distance location
zgc:195001 LOC108274956 coding upstream 17085 1828671 ~ 1839338 (+)
emc10 emc10 coding upstream 30355 1816311 ~ 1826068 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding upstream 132625 1678312 ~ 1723798 (+)
med25 med25 coding upstream 198127 1631072 ~ 1658296 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding upstream 324437 1504878 ~ 1531986 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding downstream 18725 1890285 ~ 1903186 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding downstream 140673 2012233 ~ 2061070 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding downstream 212992 2084552 ~ 2091453 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding downstream 220999 2092559 ~ 2114069 (+)
grna NA coding downstream 258968 2130528 ~ 2174611 (+)
G203885 NA non-coding upstream 31130 1824978 ~ 1825293 (+)
G203672 NA non-coding upstream 289794 1565356 ~ 1566629 (+)
G203662 NA non-coding upstream 323378 1522226 ~ 1533045 (+)
G203660 NA non-coding upstream 355630 1446989 ~ 1500793 (+)
G203647 NA non-coding upstream 415408 1362383 ~ 1441015 (+)
G203906 NA non-coding downstream 34279 1905839 ~ 1922479 (+)
G203913 NA non-coding downstream 47463 1919023 ~ 1987215 (+)
G203935 NA non-coding downstream 136841 2008401 ~ 2008606 (+)
G203955 NA non-coding downstream 282876 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 326553 2198113 ~ 2198333 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 236449 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 494963 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 619221 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 800089 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 1050078 778840 ~ 806345 (+)
ccndx LOC108280826 other downstream 11492 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 45645 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 306123 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 996208 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 1132048 3003608 ~ 3012859 (+)

Expression


Co-expression Network