G203935


Basic Information

Item Value
gene id G203935
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2008401 ~ 2008606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241543
ctttgttgcttgctaCTGTCAATGAAATCCATGTTGCGCATATACATAAAACATGAATGTTAATCTGTCACTTTTGTAGTATGTCTACACCAAGCTTTATCTCAGCCTCATGAATCATACAAtactaatgttaatgttaatatcaaTTCCTACATTTATACTTTTAAGTGATTTAGGGATTTCCCCTGACTAAAATATGAACTTGT

Function

NR:

description
PREDICTED: NT-3 growth factor receptor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241543 True 206 lncRNA 0.32 1 2008401 2008606

Neighbor

gene id symbol gene type direction distance location
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding upstream 105215 1890285 ~ 1903186 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 138231 1854742 ~ 1870170 (+)
zgc:195001 LOC108274956 coding upstream 169063 1828671 ~ 1839338 (+)
emc10 emc10 coding upstream 182333 1816311 ~ 1826068 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding upstream 284603 1678312 ~ 1723798 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding downstream 3627 2012233 ~ 2061070 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding downstream 75946 2084552 ~ 2091453 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding downstream 83953 2092559 ~ 2114069 (+)
grna NA coding downstream 121922 2130528 ~ 2174611 (+)
LOC117598829 NA coding downstream 146993 2155599 ~ 2155849 (+)
G203913 NA non-coding upstream 21186 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 85922 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 136841 1856423 ~ 1871560 (+)
G203867 NA non-coding upstream 141390 1772629 ~ 1867011 (+)
G203885 NA non-coding upstream 183108 1824978 ~ 1825293 (+)
G203955 NA non-coding downstream 145830 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 189507 2198113 ~ 2198333 (+)
G203973 NA non-coding downstream 215943 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 249876 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 380378 2388984 ~ 2392499 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 20486 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 118886 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 388427 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 646941 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 771199 1220494 ~ 1237202 (+)
rundc1 rundc1 other downstream 169077 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 859162 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 995002 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1184098 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1525683 3534289 ~ 3661164 (+)

Expression


Co-expression Network