G203955


Basic Information

Item Value
gene id G203955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2154436 ~ 2159283 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241566
gttctatcgggttcaggtcaggactctgtgcaggccagtcaagttcatccacaccagactctgtcatccatgtctttatggaccttgctttgtgcactggtgcgcagtcatgttggaagaggaaggggcccgctccaaactgttcccacaaggttgggagcatggaattgtccaaaatgttttggtatcctgaagcattcaaagttcctttcactggaactaaggggccaagcccaactcctgaaaaacaaccccaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241566 True 258 lncRNA 0.50 2 2154436 2159283

Neighbor

gene id symbol gene type direction distance location
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding upstream 40367 2092559 ~ 2114069 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding upstream 62983 2084552 ~ 2091453 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding upstream 93366 2012233 ~ 2061070 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding upstream 251250 1890285 ~ 1903186 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 284266 1854742 ~ 1870170 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding downstream 28082 2187365 ~ 2195026 (+)
slc25a39 LOC108276595,LOC108434938 coding downstream 39466 2198749 ~ 2212411 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 80326 2239609 ~ 2258256 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 462887 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 696113 2855396 ~ 2856253 (+)
G203935 NA non-coding upstream 145830 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 167221 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 231957 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 282876 1856423 ~ 1871560 (+)
G203867 NA non-coding upstream 287425 1772629 ~ 1867011 (+)
G203965 NA non-coding downstream 38830 2198113 ~ 2198333 (+)
G203973 NA non-coding downstream 65266 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 99199 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 229701 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 364705 2523988 ~ 2524878 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 166521 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 264921 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 534462 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 792976 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 917234 1220494 ~ 1237202 (+)
rundc1 rundc1 other downstream 18400 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 708485 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 844325 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1033421 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1375006 3534289 ~ 3661164 (+)

Expression


Co-expression Network