G203967


Basic Information

Item Value
gene id G203967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2258482 ~ 2260374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241581
AAAGACTTAAACTTGGTGTCCTCAAACTTTTGCCAGTCCGTAACTGTAGTTAATTTATTAGAAGGAAAccataatgcaaaaaaagtgATATAATCATGACAATGCATGAAACCGGCTGAAAGTGAAACGTTTCACAGAGAAAATGCTGAATTGTTACATGTGTTACTACTGACTTTTAGGTTATTTATAAATAGTTGTAGTGTTCCTGCTTGTAGCTTTTTGCGTCTGAAGTGTGTGGGTTTTattctctgagagagagagagagagagagagagaacatggagTTCGATGTGCAATAGAAGGGCTGGGTGTGAAATGTGGCTTTAACTTTATCGAAGGGCGCGGACTTCGCCACGTGACGGTGAAATCTGCATGACTTTTAAGTTGAGGAATgtactaaacttttttttgggATGCAGCGATaccatttttttcagcaggagtgcatgttttttggtaTTCATCAGTACTGATACGGAAATAAAcacttagtattaatcaatcacgGACGTCATGGAATCAGCTTATTTAGCTCCGTTTCTGTTTCCCTGGTTTCAGTAGAGTCCATCAtgagtgtacatgtgtgtgtttatgcacttAGGCTACTAGAGTCGTTCTTTATAATGTCCGTGAGTTGATTTTCATATCAAATGAAGtgctttagctagctacattagttagcCTGGATCGAGTAGGATTGCAGAAAATAGCAGCTTTGTGTCTTCATTCTgtcagaattcttttttttttttttgaatattttttattttaattttcgtTTTTTCCTCACATAGCCAGGGTTCACTGCTAGTGATGAACTCCTCGTAGGAAGacgctgtagttcctcctcttgatgTTTTGACGAGGAGTTTGCTTTACTTTGATTATTAATTGTAAAATAcgtccagatcgctgtcattaAGCTTAATCCGTTTATTAGTCACGCTGTATGAGAGCATTTTTTACAACTTTTAGAGCTCAGTAAATGAGTATtggtatcgatgcatccctgatttttgttgttgttgttgttcatggatttaaaaaatgcacttgAAGATCGGCTGTGTTTGCTGATCCTCAATCAGAACTTATTATAGTCTTAAAACGAATTcggataataatgatgatgatgatgatgtggcatctgcagtgtgtaatttaaaatgtgttgcttTAAAAATTCTATGGTTGATCTTAAAACTAAGGAATGATAAGTACTGTATCATGCTGTGAACCATTTCgcattatataattaatatataaggAAAATGATTAACAACTTGAGTGGCAATCATAAAATATCTACACGTGATGTTAAACATTGTAGAAATGCTTGTAgtgaagaagcaaaaaaaaaaaccaaacaaaaaaagcctTGTGGAAATGATCTATATTTTGATAATTCAATTTCCCTTGTACTTGATAACGTACAATCTAAACGCACCTTAAGGGAATTTTCTGTAGCTCGATCCGAATCCAAAAAGCGTTCCACGTTAATGCTGTGTGAATTATTTCCGACTTCCTGACGTATTGGAGAATCTCATGCTTGTCAGAATGGGTGTaaatacttttactttcatgGTCTGTAAGTACACAAagtgtacatttatatttacaagttTAACTTACTCTAATTATTAgaagtttccttttttttttctgcgaaGACATCCCCTAATTTCTTCCACTGATTCTGCACCTCTCTCTGGTGCTTTTAGGAGTcattagaaatgaaaaaatgaccaaaaagaTGTGGACCATGTGCttcgtttatttattaaagtggaAAAGTTTTCTGCTTGCACCGTGACGAGTGGAAAGCAGCGCCGTGAATCAACTCATGCTGTTCTTTATgtaacacacacctgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241581 True 1873 lncRNA 0.36 2 2258482 2260374

Neighbor

gene id symbol gene type direction distance location
nbr1b LOC108276620,LOC108437991 coding upstream 226 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 46071 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 63456 2187365 ~ 2195026 (+)
grna NA coding upstream 83871 2130528 ~ 2174611 (+)
LOC117598829 NA coding upstream 102633 2155599 ~ 2155849 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 361796 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 595022 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 647798 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 653884 2914258 ~ 2983091 (+)
LOC113528204 LOC108258307 coding downstream 658500 2918874 ~ 2936656 (+)
G203973 NA non-coding upstream 31318 2224549 ~ 2227164 (+)
G203965 NA non-coding upstream 60149 2198113 ~ 2198333 (+)
G203955 NA non-coding upstream 99199 2154436 ~ 2159283 (+)
G203935 NA non-coding upstream 249876 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 271267 1919023 ~ 1987215 (+)
G203996 NA non-coding downstream 128610 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 263614 2523988 ~ 2524878 (+)
G204316 NA non-coding downstream 280740 2541114 ~ 2541458 (+)
G204323 NA non-coding downstream 284615 2544989 ~ 2737286 (+)
G204330 NA non-coding downstream 358653 2619027 ~ 2627149 (+)
rundc1 rundc1 other upstream 72318 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 270567 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 368967 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 638508 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 897022 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 607394 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 743234 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 932330 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1273915 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1706359 3966733 ~ 3986284 (+)

Expression


Co-expression Network