G203973


Basic Information

Item Value
gene id G203973
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2224549 ~ 2227164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241588
TGGAATTCgatttaactttattttgtgCAAGATTTACTTCTCATACACTTCAATCATAAATGACATGTTTATATAGATACATAGAGATTATAAAATGTACatgaaattacataaaaaatctcaaaaatctttaaaaactcCTGAACAGGGAAGTAACGCTGTAACACAAGTAACACTGAAAAACTTGTAGTGGTGTTTTATTatacaacattttttattttcagtttgaaGTATTTCCTTGCTTTTTCTAAAGTGGACTTTCACATATCTTTGGGAGTAGAAATGGCAAGACGTTTGATAATGAGCAATTTCCTCgcattaatataaacgtgtgatgtgaattacagctggaactactatcCCAGCTGTGCTGTTAATCAACACcctttgaccaatcagaatccagaattcaacagcgctgtggtaaaaAAGGATTTAATGAACATTATAACGCCTTTCTGCTGCTCACCTCATTCTCAATGCTCTCATTATCCTTGATGTAGTTGCTGAAGTCGACTACTGGGTTCCACATGTTATTCTGACTGTACAGACTGCTGCAGGTCTGTTCTGTGTCTTTATGCTTCGTTATGGCAACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241588 True 598 lncRNA 0.35 2 2224549 2227164

Neighbor

gene id symbol gene type direction distance location
slc25a39 LOC108276595,LOC108434938 coding upstream 12138 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 29523 2187365 ~ 2195026 (+)
grna NA coding upstream 49938 2130528 ~ 2174611 (+)
LOC117598829 NA coding upstream 68700 2155599 ~ 2155849 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding upstream 110480 2092559 ~ 2114069 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 12445 2239609 ~ 2258256 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 395006 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 628232 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 681008 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 687094 2914258 ~ 2983091 (+)
G203965 NA non-coding upstream 26216 2198113 ~ 2198333 (+)
G203955 NA non-coding upstream 65266 2154436 ~ 2159283 (+)
G203935 NA non-coding upstream 215943 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 237334 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 302070 1905839 ~ 1922479 (+)
G203967 NA non-coding downstream 31318 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 161820 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 296824 2523988 ~ 2524878 (+)
G204316 NA non-coding downstream 313950 2541114 ~ 2541458 (+)
G204323 NA non-coding downstream 317825 2544989 ~ 2737286 (+)
rundc1 rundc1 other upstream 38385 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 236634 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 335034 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 604575 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 863089 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 640604 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 776444 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 965540 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1307125 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1739569 3966733 ~ 3986284 (+)

Expression


Co-expression Network