G204095


Basic Information

Item Value
gene id G204095
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1868498 ~ 1905038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241733
CTTTATtaccattaaaataataaacagaaaccaCATAAATCCTGTTCTGTCTGctcacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtatgtgcaTGCTGGCATGAGTGTTTAAGAATCAAATAACTGAGcagtacagaaacattttaaagcgAAATGTGCAACAGGTGGAAACTAGCTAAAAAGTAACGTAAGTCTGAGTCACGCAAAATCCATAAATAACGTACAAAAACCTAAATAACGCTGTTACGCTCCTTAatctctttatttcatttaatttctttgtaaaataGCAGTGTTAGTGTTTATAGTGGAATTttgatcatcatcatccactTCCACCTGTATTATACAATCCACCtttaggaggtgtggcctagcAATTTAGGGGCGGAGTCAATTCAAATTGCACTGAGGAATAACGCTGCCCCCACAGCGAGTGACGTCAGaacaacatggccgctcacagcttGTTAAATCTCTAACGCGAACTCTACAGATCGCTGTTTTGAGAAGATAAATATACGTCACTTATCACACGTCGCTGAGTCGCTTGACGCAAACAAAAGATGATTCCAATGATGTTGTccgtttcttttttaaaaatgacataactCCCACTTCCGAGGTAAATCAAGTACAGCATAACGTAATTCTGAatgtccaagatggccgccgctATGAATAACGCTCCAGCGCGACGTCACTAAAGAACAGGGTGAAGACTTCTTTTAACCTGTTcgcttgttagcaacattagtcttgtagctccagtgcaaaatgaAACACGATACACACATTTCAGCCAAACGACTGCATCTGAAGTAAAAGTTTTTCACCAAACTTTTCAcgatttcttaaaaaaaaggaaagcaaatTTCATCCCTGTGAGAAGAGACTGCGGAAAACTTGAGATATTTTCTAAAAGTTTACACACTATTCAAGTTAAActtcaccctgaaacacattaaatatgtttacattcaaatatttttgaCGTGTTTAGCGATTCTTGTGCTAATTTTTATTTTCGCAGTTACACTGGAGTGTAATCAACGATGAAAGCGATCCGGTTTTGCTCTTAGCGcctaaaaacaaaatcttttcTCGCTCCCTTTTCATTTTCCAGCATCGTTCAAGGTcgtattaatgagaaatctagCGTAGATGTCGTAGACACGTCGGCGCAAAAACACGTCCGGCATCAGACGTGTCCCAGAATACACTGCAGCAGTACGACGGCGagagactcggctcggctagttagagATCTACGATACGATGAGTGTTAGCGTGAAAGTTGAACTTtcggaagctgatctgtttgaggaGAGTGTGagcactaaagcgccgctgcatttCGGTAGAAAAGAACATGAAGAAAGGGTTAAATCCCGCTGCAGCGCTATCAGCAGGCAGTCGGACggtattgtgggtaatgtaggaagcCGTTaggaatttcattacaaaataaatcttggatgtcGTTAAAGATCACGTGATAATTACGcagattaatatgcaaatgattcAGGAAGAGTTTTCCTTTGATCAAGCGAGattaaaaaccaaaaaccaaaCCATACAATAAAAGTCGGCTGTAATTAAAGGTTACGATGAGGAGTGTTTAGCAGCAGcgtatacatatgtgtgtgtgtgtgtgtgtgtgtgtttttttcagagTTTTGTCACCTGCTTATATTTAGTGGTTCTCTCAAAGAAACACTTTCACTCAAATATCTATGTTCACtgtatccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttg
>TU241735
CTTTATtaccattaaaataataaacagaaaccaCATAAATCCTGTTCTGTCTGctcacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtatgtgcaTGCTGGCATGAGTGTTTAAGAATCAAATAACTGAGcagtacagaaacattttaaagcgAAATGTGCAACAGGTGGAAACTAGCTAAAAAGTAACGTAAGTCTGAGTCACGCAAAATCCATAAATAACGTACAAAAACCTAAATAACGCTGTTACGCTCCTTAatctctttatttcatttaatttctttgtaaaataGCAGTGTTAGTGTTTATAGTGGAATTttgatcatcatcatccactTCCACCTGTATTATACAATCCACCtttaggaggtgtggcctagcAATTTAGGGGCGGAGTCAATTCAAATTGCACTGAGGAATAACGCTGCGTTCGGCTGAAGGTCGTAACTCATCATTTCTGACCTCCgattaagaaaaacaaaaataaacgcCCCCACAGCGAGTGACGTCAGaacaacatggccgctcacagcttGTTAAATCTCTAACGCGAACTCTACAGATCGCTGTTTTGAGAAGATAAATATACGTCACTTATCACACGTCGCTGAGTCGCTTGACGCAAACAAAAGATGATTCCAATGATGTTGTccgtttcttttttaaaaatgacataactCCCACTTCCGAGGTAAATCAAGTACAGCATAACGTAATTCTGAatgtccaagatggccgccgctATGAATAACGCTCCAGCGCGACGTCACTAAAGAACAGGGTGAAGACTTCTTTTAACCTGTTcgcttgttagcaacattagtcttgtagctccagtgcaaaatgaAACACGATACACACATTTCAGCCAAACGACTGCATCTGAAGTAAAAGTTTTTCACCAAACTTTTCAcgatttcttaaaaaaaaggaaagcaaatTTCATCCCTGTGAGAAGAGACTGCGGAAAACTTGAGATATTTTCTAAAAGTTTACACACTATTCAAGTTAAActtcaccctgaaacacattaaatatgtttacattcaaatatttttgaCGTGTTTAGCGATTCTTGTGCTAATTTTTATTTTCGCAGTTACACTGGAGTGTAATCAACGATGAAAGCGATCCGGTTTTGCTCTTAGCGcctaaaaacaaaatcttttcTCGCTCCCTTTTCATTTTCCAGCATCGTTCAAGGTcgtattaatgagaaatctagCGTAGATGTCGTAGACACGTCGGCGCAAAAACACGTCCGGCATCAGACGTGTCCCAGAATACACTGCAGCAGTACGACGGCGagagactcggctcggctagttagagATCTACGATACGATGAGTGTTAGCGTGAAAGTTGAACTTtcggaagctgatctgtttgaggaGAGTGTGagcactaaagcgccgctgcatttCGGTAGAAAAGAACATGAAGAAAGGGTTAAATCCCGCTGCAGCGCTATCAGCAGGCAGTCGGACggtattgtgggtaatgtaggaagcCGTTaggaatttcattacaaaataaatcttggatgtcGTTAAAGATCACGTGATAATTACGcagattaatatgcaaatgattcAGGAAGAGTTTTCCTTTGATCAAGCGAGattaaaaaccaaaaaccaaaCCATACAATAAAAGTCGGCTGTAATTAAAGGTTACGATGAGGAGTGTTTAGCAGCAGcgtatacatatgtgtgtgtgtgtgtgtgtgtgtgtttttttcagagTTTTGTCACCTGCTTATATTTAGTGGTTCTCTCAAAGAAACACTTTCACTCAAATATCTATGTTCACtgtatccgtgtgtgtgtgtgtgtgtgttgaggcaGTCCATTCAGAAGAATATGAGGAGTCtgaccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacgtgAGGTGagctgttactgtgtgtgttgaggAAGGTTCTGTGGCGGCTCAGCAGGCGGGCCGTTCTGGACGTCTCCGTTCTGATCGATAGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241733 False 1840 lncRNA 0.40 3 1868498 1905038
TU241735 True 2030 lncRNA 0.41 2 1902981 1905038

Neighbor

gene id symbol gene type direction distance location
akt1s1 akt1s1,LOC107564011,LOC107680841 coding downstream 8789 1841989 ~ 1859709 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding downstream 56454 1767306 ~ 1812044 (-)
LOC113528659 NA coding downstream 368893 1499515 ~ 1499605 (-)
LOC113528660 NA coding downstream 369148 1499261 ~ 1499350 (-)
LOC113527946 LOC108280870,LOC103034911 coding downstream 552323 1309888 ~ 1316175 (-)
aoc2 LOC108276610 coding upstream 320573 2225611 ~ 2233295 (-)
LOC113528224 LOC108276032 coding upstream 364633 2269671 ~ 2283303 (-)
LOC117598982 LOC108276075,LOC108276032 coding upstream 384379 2289417 ~ 2304449 (-)
LOC113528064 LOC108276106,LOC108276032 coding upstream 400238 2305276 ~ 2323646 (-)
LOC113528065 LOC108276106,LOC108261374,LOC108276032,LOC108276084 coding upstream 458086 2363124 ~ 2375676 (-)
G204107 NA non-coding downstream 561 1867292 ~ 1867937 (-)
G204090 NA non-coding downstream 101629 1766651 ~ 1766869 (-)
G204087 NA non-coding downstream 118107 1750182 ~ 1750391 (-)
G204084 NA non-coding downstream 132778 1735518 ~ 1735720 (-)
G204080 NA non-coding downstream 137298 1731001 ~ 1731200 (-)
G204145 NA non-coding upstream 36311 1941349 ~ 1941880 (-)
G204234 NA non-coding upstream 300740 2205778 ~ 2206121 (-)
G204187 NA non-coding upstream 305747 2210785 ~ 2212443 (-)
G204191 NA non-coding upstream 308079 2213117 ~ 2214598 (-)
G204264 NA non-coding upstream 353466 2258504 ~ 2260374 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 523327 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 737948 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 801678 947730 ~ 1066820 (-)
G203544 NA other downstream 957270 910117 ~ 911228 (-)
LOC117598979 NA other downstream 1114676 750063 ~ 753822 (-)
LOC113527889 LOC108278777 other upstream 86135 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 160850 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 207407 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 426638 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 528111 2433149 ~ 2538111 (-)

Expression


Co-expression Network