G204117 (nucb1,LOC102787595,LOC101482526,LOC100690097,LOC108280797,LOC107551137,LOC107687629,LOC101169036)


Basic Information

Item Value
gene id G204117
gene name nucb1,LOC102787595,LOC101482526,LOC100690097,LOC108280797,LOC107551137,LOC107687629,LOC101169036
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1894069 ~ 1898760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241760
CCCGTCCGTCTCCTCCCACACCTCTCTCAGCTGGTCCACACTCCCCGGGGCGTTGACTTTGGGATGCTGGCGGTGTTTTTCCTTCatctcctccatcctcttctcctccctctccctcttctccTGGTCCAGACTCTTCAGGTACTCCCTCCTCTCGTGCTCCTTCAGCATCTCGTAACGCTTGAACTCCTCGTGACGCTCCGCATCGTAGTTCTCCAGGTCTTTAGTGGCCGTCGCGATGAGCAGCTCCAGGTCTTTGGCCTCGAATGTGTTCTGATTGTGAGGGTCCAGATGCTCGAACTGCTTCA

Function

symbol description
nucb1 Predicted to enable calcium ion binding activity. Predicted to be located in Golgi apparatus and extracellular region. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human NUCB1 (nucleobindin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241760 True 308 lncRNA 0.57 3 1894069 1898760

Neighbor

gene id symbol gene type direction distance location
akt1s1 akt1s1,LOC107564011,LOC107680841 coding downstream 34360 1841989 ~ 1859709 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding downstream 82025 1767306 ~ 1812044 (-)
LOC113528659 NA coding downstream 394464 1499515 ~ 1499605 (-)
LOC113528660 NA coding downstream 394719 1499261 ~ 1499350 (-)
LOC113527946 LOC108280870,LOC103034911 coding downstream 577894 1309888 ~ 1316175 (-)
aoc2 LOC108276610 coding upstream 326851 2225611 ~ 2233295 (-)
LOC113528224 LOC108276032 coding upstream 370911 2269671 ~ 2283303 (-)
LOC117598982 LOC108276075,LOC108276032 coding upstream 390657 2289417 ~ 2304449 (-)
LOC113528064 LOC108276106,LOC108276032 coding upstream 406516 2305276 ~ 2323646 (-)
LOC113528065 LOC108276106,LOC108261374,LOC108276032,LOC108276084 coding upstream 464364 2363124 ~ 2375676 (-)
G204062 LOC108274956 non-coding downstream 947 1838588 ~ 1893122 (-)
G204060 NA non-coding downstream 22518 1856423 ~ 1871551 (-)
LOC117598839 NA non-coding downstream 23284 1870124 ~ 1870785 (-)
G204107 NA non-coding downstream 26132 1867292 ~ 1867937 (-)
G204090 NA non-coding downstream 127200 1766651 ~ 1766869 (-)
G204145 NA non-coding upstream 42589 1941349 ~ 1941880 (-)
G204234 NA non-coding upstream 307018 2205778 ~ 2206121 (-)
G204187 NA non-coding upstream 312025 2210785 ~ 2212443 (-)
G204191 NA non-coding upstream 314357 2213117 ~ 2214598 (-)
G204264 NA non-coding upstream 359744 2258504 ~ 2260374 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 548898 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 763519 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 827249 947730 ~ 1066820 (-)
G203544 NA other downstream 982841 910117 ~ 911228 (-)
LOC117598979 NA other downstream 1140247 750063 ~ 753822 (-)
LOC113527889 LOC108278777 other upstream 92413 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 167128 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 213685 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 432916 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 534389 2433149 ~ 2538111 (-)

Expression


Co-expression Network