G204264


Basic Information

Item Value
gene id G204264
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2258504 ~ 2260374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241924
agcaggtgtgtgttacATAAAGAACAGCATGAGTTGATTCACGGCGCTGCTTTCCACTCGTCACGGTGCAAGCAGAAAACTTTtccactttaataaataaacgaaGCACATGGTCCACAtctttttggtcattttttcatttctaatgACTCCTAAAAGCACCAGAGAGAGGTGCAGAATCAGTGGAAGAAATTAGGGGATGTCttcgcagaaaaaaaaaaggaaacttcTAATAATTAGAGTAAGTTAaacttgtaaatataaatgtacactTTGTGTACTTACAGACcatgaaagtaaaagtatttACACCCATTCTGACAAGCATGAGATTCTCCAATACGTCAGGAAGTCGGAAATAATTCACACAGCATTAACGTGGAACGCTTTTTGGATTCGGATCGAGCTACAGAAAATTCCCTTAAGGTGCGTTTAGATTGTACGTTATCAAGTACAAGGGAAATTGAATTATCAAAATATAGATCATTTCCACAaggctttttttgtttggtttttttttttgcttcttcacTACAAGCATTTCTACAATGTTTAACATCACGTGTAGATATTTTATGATTGCCACTCAAGTTGTTAATCATTTTccttatatattaattatataatgcGAAATGGTTCACAGCATGATACAGTACTTATCATTCCTTAGTTTTAAGATCAACCATAGAATTTTTAaagcaacacattttaaattacacactgcagatgccacatcatcatcatcatcattattatccgAATTCGTTTTAAGACTATAATAAGTTCTGATTGAGGATCAGCAAACACAGCCGATCTTcaagtgcattttttaaatccatgaacaacaacaacaacaaaaatcagggatgcatcgataccaATACTCATTTACTGAGCTCTAAAAGTTGTAAAAAATGCTCTCATACAGCGTGACTAATAAACGGATTAAGCTtaatgacagcgatctggacgTATTTTACAATTAATAATCAAAGTAAAGCAAACTCCTCGTCAAAAcatcaagaggaggaactacagcgtCTTCCTACGAGGAGTTCATCACTAGCAGTGAACCCTGGCTATGTGAGGAAAAAacgaaaattaaaataaaaaatattcaaaaaaaaaaaaaagaattctgacAGAATGAAGACACAAAGCTGCTATTTTCTGCAATCCTACTCGATCCAGgctaactaatgtagctagctaaagcaCTTCATTTGATATGAAAATCAACTCACGGACATTATAAAGAACGACTCTAGTAGCCTaagtgcataaacacacacatgtacactcaTGATGGACTCTACTGAAACCAGGGAAACAGAAACGGAGCTAAATAAGCTGATTCCATGACGTCcgtgattgattaatactaagtgTTTATTTCCGTATCAGTACTGATGAAtaccaaaaaacatgcactcctgctgaaaaaaatggtATCGCTGCATcccaaaaaaaagtttagtacATTCCTCAACTTAAAAGTCATGCAGATTTCACCGTCACGTGGCGAAGTCCGCGCCCTTCGATAAAGTTAAAGCCACATTTCACACCCAGCCCTTCTATTGCACATCGAActccatgttctctctctctctctctctctctctcagagaatAAAACCCACACACTTCAGACGCAAAAAGCTACAAGCAGGAACACTACAACTATTTATAAATAACCTAAAAGTCAGTAGTAACACATGTAACAATTCAGCATTTTCTCTGTGAAACGTTTCACTTTCAGCCGGTTTCATGCATTGTCATGATTATATcactttttttgcattatggTTTCCTTCTAATAAATTAACTACAGTTACGGACTGGCAAAAGTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241924 True 1851 lncRNA 0.36 2 2258504 2260374

Neighbor

gene id symbol gene type direction distance location
aoc2 LOC108276610 coding downstream 25209 2225611 ~ 2233295 (-)
akt1s1 akt1s1,LOC107564011,LOC107680841 coding downstream 398795 1841989 ~ 1859709 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding downstream 446460 1767306 ~ 1812044 (-)
LOC113528659 NA coding downstream 758899 1499515 ~ 1499605 (-)
LOC113528660 NA coding downstream 759154 1499261 ~ 1499350 (-)
LOC113528224 LOC108276032 coding upstream 9297 2269671 ~ 2283303 (-)
LOC117598982 LOC108276075,LOC108276032 coding upstream 29043 2289417 ~ 2304449 (-)
LOC113528064 LOC108276106,LOC108276032 coding upstream 44902 2305276 ~ 2323646 (-)
LOC113528065 LOC108276106,LOC108261374,LOC108276032,LOC108276084 coding upstream 102750 2363124 ~ 2375676 (-)
LOC113528063 LOC108261353,LOC108261342,LOC108276032 coding upstream 131789 2392163 ~ 2400882 (-)
G204191 NA non-coding downstream 43906 2213117 ~ 2214598 (-)
G204187 NA non-coding downstream 46061 2210785 ~ 2212443 (-)
G204234 NA non-coding downstream 52383 2205778 ~ 2206121 (-)
G204145 NA non-coding downstream 316624 1941349 ~ 1941880 (-)
G204117 nucb1,LOC102787595,LOC101482526,LOC100690097,LOC108280797,LOC107551137,LOC107687629,LOC101169036 non-coding downstream 359744 1894069 ~ 1898760 (-)
G204269 NA non-coding upstream 4469 2264843 ~ 2265213 (-)
G204275 NA non-coding upstream 64512 2324886 ~ 2379453 (-)
LOC117598835 NA non-coding upstream 153945 2414319 ~ 2415527 (-)
LOC117598837 NA non-coding upstream 236238 2496612 ~ 2502195 (-)
G204317 NA non-coding upstream 280752 2541126 ~ 2541525 (-)
ifi35 ifi35 other downstream 62964 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 181027 2065888 ~ 2077477 (-)
LOC113527889 LOC108278777 other downstream 245253 1991173 ~ 2013251 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 913333 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 1127954 1126684 ~ 1130550 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 71302 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 172775 2433149 ~ 2538111 (-)
si:dkey-283b1.6 NA other upstream 773872 3034246 ~ 3039652 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other upstream 813603 3073977 ~ 3078018 (-)
nde1 nde1 other upstream 1122457 3382831 ~ 3413767 (-)

Expression


Co-expression Network