LOC113528223 (LOC108276032,LOC108261353,LOC108261342)


Basic Information

Item Value
gene id LOC113528223
gene name LOC108276032,LOC108261353,LOC108261342
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2331676 ~ 2344912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241938
CCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACCCAGCCCAACATGCATCTCTGTGGACTTCAGTTTATGTAAAACTGGGACATCAATAAAGAAGCAAACTGCAGAGTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCATATCATCCAGGAGCAACTCCATTACCA
>XM_034310168.1
ATGGCGCTAACATACGACTTGCTGGTGGCAATCACTCCTGCTCTGGGAAGTGGCCCAATATGGCTGGATGATGTTCAGTGTAATGGAACTGAGAGCTACATAGATCAGTGCTCACACAGAGGATTTCGAGTAGAGAACTTTGGACATCATGAAGATGCTGGAGTTGTGTGCTCAAaCCTGCAGACTCCCACATTGACTCGAATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACCCAGCCCAACATGCATCTCTGTGGACTTCAGGTTGTATAAGGATGGGACTTCAGTAAAGAATCAAACTGCAGAGTCTACAACAACATTTAATCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCACATCATCCAGGAGCAACTCCATTACCATCACTGTGGTGCATAACATGATCAGGCTGGTGAATGGTCTGAGTAACTGTTGTGGTCGAGTGGAGATCCAGCACAAAGcccagtggggaacagtgtgtgatcatTCCTGGGACTTGAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCGTAATGCCCGCTTTGGTCAGAGAAGTGAGCCAACCTGGCTGGATGATGTTAAGTGTACTGGAACTGAGAGCTACATAGATCAGTGCTCACACAGAGGATTTGGAGTAGACAACTGTAGACATCATGAAGATGCTGGAGTCGTGTGCTCAAaCCTGCAGACTCCTACATTGACTCGAATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACCCAGCCCAACATGCATCTCTGTGGACTTCAGTTTATGTAAAACTGGGACATCAATGAAGAATCAAACTGCAGAGTCTAGAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTATTCATACAAGGAAAGTAACTCCATATCATCCAGGAGCAACTCCATTACCATCACTGTGGTGAAGCTGCAGCAGCCCAGTATCTCCTTCGGTGCTGCTGGTGGACCAGAAGTGACAAGGGGCTATGGCTTCTCCATCATCTGCTCCACTGAACGTCAGTATCCAGGAGGTTCCTTCCACTTGAAGTTGAGTGGATCCAACATCACCAGAACTCAGTCAGCTGTTAATCACTCAGCCGTCTTCCTGTTTCCTAAGGCAGATTTTGTCCATCAGGGAATCTACAGCTGTACTTATGAAGTTATCGTGTCCTCACGCACCTTTACTTCCACTACCACTGAGCTCCTGTTCATCACTGTGAAAGCATCTCTGGCTCCCTACATTGGTGTTGGAGTGACAGCAGTACTGCTTCTCATATTAGTTCCAGTCATCATTTGCTTTGTGAAGACACAAAAAAGACGTCAAAGACAATGTCAGATGGACAGGAAGAAGGATACACAGTGTGCCAGAAACACATGTGACAGTCCCCAAGGAGAGGTTGAGACAGATGATGAAGCCGAttatgaaaacactgaaattatttTCCCGCAGAAGGACGATTCAGACAACTCTGATAATGACTACATTAATGTTGATGCTCATGAACAAAGAAGTGATGTGGACAATGACTATGAGGATGTAGACATTTATGCAAACTGTGTAGAGAACTAAACAATTATCCAATATCTACAGTCCACAAACAATAACATGGTTAATTTGGATAATTTTCCATTattaagatattattattttctagttgttttaaacaaaaccaCTTTTAGAATCAGtttgttttcatctgtttagTCTGCTTAGATGTTACTacattaaaacttttatttccatGTTCTTACTAGTTTATTGTTACCCATTTATCTCACTGCTACTTGATATTAAAATGCTTTAGAGGTCCAATACAAATTGgtcctttttcattttgtattttaatgttatattgaAATGCATCaagatttaaattatatatcagTGTTTTCCATAAACTACTGACAAATGTAGaaatcaaaaaataatgataGGGTCACCTgaaatttagtttttaattctTATATCACTCCTAAACTTCCAAAACAGTCATATAGagtcaaataatattttgaaattagattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241938 False 238 lncRNA 0.45 2 2331676 2342773
XM_034310168.1 True 2152 mRNA 0.42 8 2338877 2344912

Neighbor

gene id symbol gene type direction distance location
LOC113528064 LOC108276106,LOC108276032 coding downstream 8030 2305276 ~ 2323646 (-)
LOC117598982 LOC108276075,LOC108276032 coding downstream 27227 2289417 ~ 2304449 (-)
LOC113528224 LOC108276032 coding downstream 48373 2269671 ~ 2283303 (-)
aoc2 LOC108276610 coding downstream 98381 2225611 ~ 2233295 (-)
akt1s1 akt1s1,LOC107564011,LOC107680841 coding downstream 471967 1841989 ~ 1859709 (-)
LOC113528065 LOC108276106,LOC108261374,LOC108276032,LOC108276084 coding upstream 18212 2363124 ~ 2375676 (-)
LOC113528063 LOC108261353,LOC108261342,LOC108276032 coding upstream 47251 2392163 ~ 2400882 (-)
rarab rara,LOC108261354,LOC107554136,LOC108434941,LOC107689638,LOC107737746,LOC107695008,LOC107582978 coding upstream 394326 2739238 ~ 2775089 (-)
LOC117598766 NA coding upstream 444264 2789176 ~ 2833854 (-)
abi3a LOC108276098,LOC108434940 coding upstream 695069 3039981 ~ 3054967 (-)
G204269 NA non-coding downstream 66463 2264843 ~ 2265213 (-)
G204264 NA non-coding downstream 71302 2258504 ~ 2260374 (-)
G204191 NA non-coding downstream 117078 2213117 ~ 2214598 (-)
G204187 NA non-coding downstream 119233 2210785 ~ 2212443 (-)
G204234 NA non-coding downstream 125555 2205778 ~ 2206121 (-)
LOC117598835 NA non-coding upstream 69407 2414319 ~ 2415527 (-)
LOC117598837 NA non-coding upstream 151700 2496612 ~ 2502195 (-)
G204317 NA non-coding upstream 196214 2541126 ~ 2541525 (-)
LOC117598767 NA non-coding upstream 254797 2599709 ~ 2600352 (-)
G204518 NA non-coding upstream 620971 2965883 ~ 2970869 (-)
ifi35 ifi35 other downstream 136136 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 254199 2065888 ~ 2077477 (-)
LOC113527889 LOC108278777 other downstream 318425 1991173 ~ 2013251 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 986505 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 1201126 1126684 ~ 1130550 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 88237 2433149 ~ 2538111 (-)
si:dkey-283b1.6 NA other upstream 689334 3034246 ~ 3039652 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other upstream 729065 3073977 ~ 3078018 (-)
nde1 nde1 other upstream 1037919 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 1423943 3768855 ~ 3865849 (-)

Expression


Co-expression Network