G204330


Basic Information

Item Value
gene id G204330
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2619027 ~ 2627149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242020
GTGTGACAGGTGGAATAATGTGCACTACATACTGTAATTCAGATCCAGTAGAGGGAGCTCTAAACTGCTGCGGTATGCTGAAGGGCACGTCGCTTTTCTTCCACTCATTATACACGTGAGCTGAGGAAAGTTGTGTCCGTGCATCTTTTACACTAATACCTCCCTTTTCAGGTATGAGTGCTTTATAATGACTGTTCATGGTGGCATGTGTTTTAGTTGACGGTGTATAGATGTCCAAGAAAACATTTGCAGtactttatatttgtttattacgAAGAATGAAGTAAATTACCTGACGCTAGTCATATTAGCCTTGTTATGCTAACCGCGCCCTCGCCTGTGTAGTAGCGGTGCACAGTAGCCATCTTAAC

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU242020 True 371 lncRNA 0.43 2 2619027 2627149

Neighbor

gene id symbol gene type direction distance location
nbr1b LOC108276620,LOC108437991 coding upstream 360771 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 406616 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 424001 2187365 ~ 2195026 (+)
grna NA coding upstream 444416 2130528 ~ 2174611 (+)
hspb9 NA coding downstream 228247 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 281023 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 287109 2914258 ~ 2983091 (+)
LOC113528204 LOC108258307 coding downstream 291725 2918874 ~ 2936656 (+)
mpp2a mpp2a,LOC108276091,LOC108434916,LOC107582977,LOC107737744,LOC107758486 coding downstream 387834 3014983 ~ 3031164 (+)
G204316 NA non-coding upstream 77569 2541114 ~ 2541458 (+)
LOC117598836 NA non-coding upstream 94149 2523988 ~ 2524878 (+)
G203996 NA non-coding upstream 226528 2388984 ~ 2392499 (+)
G203967 NA non-coding upstream 358653 2258482 ~ 2260374 (+)
G203973 NA non-coding upstream 391863 2224549 ~ 2227164 (+)
G204333 NA non-coding downstream 29427 2656576 ~ 2723809 (+)
G204362 NA non-coding downstream 143537 2770686 ~ 2771310 (+)
G204410 NA non-coding downstream 407122 3034271 ~ 3036163 (+)
G204417 NA non-coding downstream 437756 3064905 ~ 3072726 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding downstream 588638 3215787 ~ 3218884 (+)
rundc1 rundc1 other upstream 432863 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 631112 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 729512 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 999053 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 1257567 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 240619 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 376459 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 565555 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 907140 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1339584 3966733 ~ 3986284 (+)

Expression


Co-expression Network