G204362


Basic Information

Item Value
gene id G204362
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2770686 ~ 2771310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242059
CATCCTGCATAACTGTACATAACACTGTACCTAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACCTAACTCATCCTGCATAACTGTACCTAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACATAACACTGAACATAACTCATCCTGCATAACTGTACATAACACTGAACATAACTCATCCTGCATAACTGTACTTAACCTGTCGAGAGCTGCATAACGGTACCTAACTCATCCTGCATAACTCATCCTGCATAACTGCACATAACTCATCCTGCATAACTGTACATAACACTGTACATAACTCATCCTGCATAACTGTACTTAACCTGTCGAGAGCTGCATAACTGCACATAACCCGCCTGCATTATTGTTTATAACCCATTCTAAGCCATATACCTGTTTATTATCTATCATTCATTACAGTACATAAGCCATCTACAGTTGTATAACTGTTTATAACCCATCCAGAGCTACCTACCTGTACATTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242059 True 565 lncRNA 0.39 2 2770686 2771310

Neighbor

gene id symbol gene type direction distance location
LOC117598986 LOC108276106,LOC108276032 coding upstream 78972 2622170 ~ 2691714 (+)
nbr1b LOC108276620,LOC108437991 coding upstream 512430 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 558275 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 575660 2187365 ~ 2195026 (+)
grna NA coding upstream 596075 2130528 ~ 2174611 (+)
hspb9 NA coding downstream 84086 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 136862 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 142948 2914258 ~ 2983091 (+)
LOC113528204 LOC108258307 coding downstream 147564 2918874 ~ 2936656 (+)
mpp2a mpp2a,LOC108276091,LOC108434916,LOC107582977,LOC107737744,LOC107758486 coding downstream 243673 3014983 ~ 3031164 (+)
G204323 NA non-coding upstream 33400 2544989 ~ 2737286 (+)
G204333 NA non-coding upstream 46877 2656576 ~ 2723809 (+)
G204330 NA non-coding upstream 143537 2619027 ~ 2627149 (+)
G204316 NA non-coding upstream 229228 2541114 ~ 2541458 (+)
LOC117598836 NA non-coding upstream 245808 2523988 ~ 2524878 (+)
G204410 NA non-coding downstream 262961 3034271 ~ 3036163 (+)
G204417 NA non-coding downstream 293595 3064905 ~ 3072726 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding downstream 444477 3215787 ~ 3218884 (+)
G204678 NA non-coding downstream 581988 3353298 ~ 3356906 (+)
G204679 NA non-coding downstream 628459 3399769 ~ 3403347 (+)
rundc1 rundc1 other upstream 584522 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 782771 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 881171 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 1150712 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 1409226 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 96458 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 232298 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 421394 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 762979 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1195423 3966733 ~ 3986284 (+)

Expression


Co-expression Network