si:dkey-283b1.7 (LOC108276203,LOC107737768,LOC104929916,LOC106607185)


Basic Information

Item Value
gene id si:dkey-283b1.7
gene name LOC108276203,LOC107737768,LOC104929916,LOC106607185
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3073977 ~ 3078018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242266
tgtttttacagtgAACTCTGATAAGTGAAATCAGAACTGCTCGCCTTTTCTCCAGGCTCttcacatttataccacagcgtgctgcagaattctggattctgattggtcagaagctgttgattgattttctagaacagcagttctgactgtagtgcagctgcaaatcacagGTCCAAACTGCTTTGCGGGGAATCGCATCATTCCGGCTGGAGAGCGAGTGGAGGTGGACGAATGGACTGTCTGTTTCTGTACCTACAAAGACGGAACCTGGCAAACGCACCCTCACGCCACGTGTGAACAGCGCCAGCAGCCAGACGAAGACGTGTTCAAGCAGATGGAGGagcaggagatggagagagagagggagagagagaggcagagagagagagagcgcttgCCCAGGTTGGATGCTATCCCATGATGGCTTGAGAATCCACAGCCTGAAGAAACACAACCTGCGCAGTACTGAGTGCCAGTGCTGACCTCTTCCACCCCCTCCAGACCCAAGACATCCAGGCTAAAACACTTCACTCACTGCATTCTGGGATACGTCTTACATTTACACTCCCAGGAAACATGGTGTGACAtgctaaaaatgttttcatgaatCCAAACATCCAGAAaagttgaaataaaatatgTCATAAAAGTCAGATGAATGCCAGATGAACCCACTGATCAGATTCATGTGAGACATGTCCAAGTGTGTGACCTAATATACTCTTCACTCGCTAGTTAGCTTTCACTCGCtagttagctttcactcactaggtcTGTCAGACTCGAAGTGACTGCTCAAGTGACTGGTGTAGGTGAagattagccccgcccactttacaATTAAAAGGTTAGCAACTATAGTGAAGAACATGTGGACACTGGAAAGTCGTTGtactgtgtgagagagaaacgtATCCTACATTACGAAAAGCCCCTTACATTTGATAAATTGGAAGTTCATTTactaaaaagtataaataaaaataacactttattaCTCAACCTTTTGAccttttctctgtctcataGACCCAGAACAACAGTACATTGAGCTAGCTAACTTTATTGAATAGTCAAACTGTATGAAGTTTATTAAATTGCTTTTAATATGGATCTAATATTGGAAAagtcattcctttttttttttagcttcagACCGCTGGCAAATCCTGTGCTAGTCTAATATTTGTAGAAGTCTTGAGTAAAATGTTCACTACAGACTCTTGTAGTGCAGGTCACCTCTacctcagaaaaaaatcatagctattttagtttaatttgaTCTAATG
>XM_026916303.2
acagatagatagatagatagatagtgttTTACAGTAGTGGAAAACTTCTTCAAATATTAGATGAGGGGAAAAACAGAGTTTACAGTTTCCTGCGCTGCGCATGTGGTCACatggagagaacacacacacacacacacacacacacacacacgcacacacacacacccctcgcGCCCCTGTGCTCGGGAAGCGCGCGTGCGGAGCGGCCGGTCAGTGAGTGTGAGTGGTGAAACCATGCGCTCTCTCGCGCTGTGTCTGTCGCTCGCGCTCCTGTGCGCTTTTCTCCGCTGCACCGCCTCCGagttctcctcctcctccaaatcCGACCTGGAGTACGAGTTCGGGGATTACCGGGGCAAATGGTGCATCGACGATCACGGCTTCGTGTATAACATCGGCGAGGTTTATTACCCGGGGCGCGCCGCGTGCCCGTGCACCTGCACGGAGGACGGACCGGTGTGCGTGCGGCCCAAGTGCCCGCGCATACACCCGCGCTGCACGCGCATCAAGTACAAGTCCTGCTGTCCGGTGTGTGAGGCCATcagcaaggtgtgtgtgtacggAGGCAAAACATACCGGCTGTTCGAGGAGTTCAGGaTATCTCGGTGTGAGCGGTGTCGCTGTGAGGCCAGTGGTGAAGTGTACTGCAGTATATCGGACTGTCCGGCTCTGCACTGTGTAAACCCTGTATACGAACCCAAGCACTGCTGCCCTGTGTGTAAGAGCGGTCCAAACTGCTTTGCGGGGAATCGCATCATTCCGGCTGGAGAGCGAGTGGAGGTGGACGAATGGACTGTCTGTTTCTGTACCTACAAAGACGGAACCTGGCAAACGCACCCTCACGCCACGTGTGAACAGCGCCAGCAGCCAGACGAAGACGTGTTCAAGCAGATGGAGGagcaggagatggagagagagagggagagagagaggcagagagagagagagcgcttgCCCAGGTTGGATGCTATCCCATGATGGCTTGAGAATCCACAGCCTGAAGAAACACAACCTGCGCAGTACTGAGTGCCAGTGCTGACCTCTTCCACCCCCTCCAGACCCAAGACATCCAGGCTAAAACACTTCACTCACTGCATTCTGGGATACGTCTTACATTTACACTCCCAGGAAACATGGTGTGACAtgctaaaaatgttttcatgaatCCAAACATCCAGAAaagttgaaataaaatatgTCATAAAAGTCAGATGAATGCCAGATGAACCCACTGATCAGATTCATGTGAGACATGTCCAAGTGTGTGACCTAATATACTCTTCACTCGCTAGTTAGCTTTCACTCGCtagttagctttcactcactaggtcTGTCAGACTCGAAGTGACTGCTCAAGTGACTGGTGTAGGTGAagattagccccgcccactttacaATTAAAAGGTTAGCAACTATAGTGAAGAACATGTGGACACTGGAAAGTCGTTGtactgtgtgagagagaaacgtATCCTACATTACGAAAAGCCCCTTACATTTGATAAATTGGAAGTTCATTTactaaaaagtataaataaaaataacactttattaCTCAA
>XM_034310182.1
atagatagacagatagatagatagatagatagtgttTTACAGTAGTGGAAAACTTCTTCAAATATTAGATGAGGGGAAAAACAGAGTTTACAGTTTCCTGCGCTGCGCATGTGGTCACatggagagaacacacacacacacacacacacacacacacacgcacacacacacacccctcgcGCCCCTGTGCTCGGGAAGCGCGCGTGCGGAGCGGCCGGTCAGTGAGTGTGAGTGGTGAAACCATGCGCTCTCTCGCGCTGTGTCTGTCGCTCGCGCTCCTGTGCGCTTTTCTCCGCTGCACCGCCTCCGagttctcctcctcctccaaatcCGACCTGGAGTACGAGTTCGGGGATTACCGGGGCAAATGGTGCATCGACGATCACGGCTTCGTGTATAACATCGGCGAGGTTTATTACCCGGGGCGCGCCGCGTGCCCGTGCACCTGCACGGAGGACGGACCGGTGTGCGTGCGGCCCAAGTGCCCGCGCATACACCCGCGCTGCACGCGCATCAAGTACAAGTCCTGCTGTCCGGTGTGTGAGGCCATcagcaaggtgtgtgtgtacggAGGCAAAACATACCGGCTGTTCGAGGAGTTCAGGaTATCTCGGTGTGAGCGGTGTCGCTGTGAGGCCAGTGGTGAAGTGTACTGCAGTATATCGGACTGTCCGGCTCTGCACTGTGTAAACCCTGTATACGAACCCAAGCACTGCTGCCCTGTGTGTAAGAGCGAAACTGGAGCACGGCCTGCTGGGAGAGCAGAGGGCCGACGGGGCAGCAGCGATGACAACAGAAGGCACGAGAGgaacagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttacagtgAACTCTGATAAGTGAAATCAGAACTGCTCGCCTTTTCTCCAGGCTCttcacatttataccacagcgtgctgcagaattctggattctgattggtcagaagctgttgattgattttctagaacagcagttctgactgtagtgcag

Function

NR:

description
PREDICTED: von Willebrand factor C domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242266 False 1289 lncRNA 0.42 2 3073977 3075688
XM_026916303.2 True 1559 mRNA 0.51 3 3074264 3078010
XM_034310182.1 False 1001 mRNA 0.55 3 3075532 3078018

Neighbor

gene id symbol gene type direction distance location
rpl23 RPL23,rpl23,rl23 coding downstream 1150 3066745 ~ 3072827 (-)
ccdc103 ccdc103 coding downstream 10166 3059168 ~ 3063811 (-)
LOC113528219 LOC108276187 coding downstream 15021 3057417 ~ 3058956 (-)
abi3a LOC108276098,LOC108434940 coding downstream 19010 3039981 ~ 3054967 (-)
LOC117598766 NA coding downstream 240123 2789176 ~ 2833854 (-)
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding upstream 76963 3154981 ~ 3159263 (-)
LOC113528655 NA coding upstream 77278 3155296 ~ 3155430 (-)
LOC113528657 NA coding upstream 78599 3156617 ~ 3156709 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding upstream 104967 3182985 ~ 3191017 (-)
prr14 NA coding upstream 122129 3200147 ~ 3213935 (-)
G204524 NA non-coding downstream 40749 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 103108 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 473625 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 532452 2541126 ~ 2541525 (-)
LOC117598837 NA non-coding downstream 571782 2496612 ~ 2502195 (-)
G204664 NA non-coding upstream 93244 3171262 ~ 3174277 (-)
G205038 NA non-coding upstream 522984 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 539153 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 552676 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 626265 3704283 ~ 3738959 (-)
si:dkey-283b1.6 NA other downstream 34325 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 535866 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 729065 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 878437 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 996500 2065888 ~ 2077477 (-)
nde1 nde1 other upstream 304813 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 690837 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 962463 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 1014895 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1644399 4722417 ~ 4734902 (-)

Expression


Co-expression Network