LOC113527909


Basic Information

Item Value
gene id LOC113527909
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3192704 ~ 3200133 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242330
TCTTGCAGAGTAAAGAAAGGAAGTGAAACAATTCTTTACTCtgggcacacacactcacacacacacacagactcacacacaggtttatttatttcagtatttattatttttattggatATACAGTTACAGTATAGACTTTCTGAGCAGAAACTGAGGGAACACACAGGAGGCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTTCTGGATCACCTGAGTTaaagtgttgtgctgttatgagACAGTGAGCGAGTGATCAGGAACTTCAGCCTTTTCCTCCTTCAACTCCCGACGAGTGTAAAAAATGTTAACCTCAGACCACGAACCAAGCAACAGCACTCCGCTGACCGAAACAACGGAGTCAGTCGACGTGGAGAAAGGCTCTGATGGTCAACACCTCGCAGCAAGAGACTACAGGAAGCTGGCTATCTGCAGCATCATATGCGGCCTGTCCTGCATTGGCATCGTGTCCCTCATTTACTCAGTTAAGACTCGAGAGTTCAACAAGAAGTCCGGTGGTGCAATATCGCAGAAAGCCAAAGAGTATTCTCAAAAAGCTCTAAAATGGGGAATAGGAGCCATCTTGGCATGGGCGGGTCTTATTCTTCTCATCCCACTGCTATTGGGACTGCTGTCGTACCTTTTGACATTTATAAACTGAAACACAGGTCATCAAAAATGCCAAATGGACAACATGTGAGCCCAAAAAGGCACAACTGAGAGTCACAGATCCccaaaaaacagacagacataggGCTCCAGTGCTGCCAAGCTGAGACAGAGACCCCAAAATCTTTCAAATCAAGGGAAATGCAGACCTGAAAATGTTGAACTAAGATGCTTGGTGCCATAAGCCCCACAACAAGAGCCAGAGGTccaaaaaacaccaaaacaaaaaaagcacagaggGGCAAGAAAAGGccaaaatgaaaacacagagtccaaaaagacagaaataaaaatcgGTGCGCCCAACAAGAGGTGTGAAGAGCCAGAGACGCACAACTGACAAGAAGCCTTAAAATGGCAAACAGAGACACTGAAGTGAGAGACATAGAGCACCAACAAGCAGAACTCGACACCAACGGCAACAAAGCGGATGATTCCACCACCACCAGGTCTAGTCCTTCTCGTCAGTAATGTGTACGGCTGAAATTTCCTTAAAATATATgttaaacaggaaggaagctattgaagaaaaattatttcagacatgtgaccctgtttggatcaactACAAAATCCAATCAGTTGGTTAAAATGATCATTCCATACAAATCCTGCAAACATTCGACAACTCATTTTTGAGATATTGCACTAATGGGAATCACGGACAGATGGAGTTTGGACACATggacaacacaaacacataatgCCTCTACCATAAAGTGGTGAAGggataataaaaatgcagaccATTATGTCTTGGACCCCTATCCCCctaccccaaaaaaaaaaatcaagagtgAAGGACGGCGAACCATAACGAAGCATGGAGACCCGAAAAACCCAAGCAGCTCCACGTAGAAGGCAACATGCATTTCTGGGCAGAATTTGCACTCCTAAGATAAAGTCTCTCTCATTTGGACAGCAGTTGCTCATTTTGGACAAAACAACTGACCCAAAAGCGGGACAGTTAAGATgaagcttgctttttttttttccacggcGTCGGAATTCTAGAGTGCGCATTAACTTTTCTCACCTGATGGACCAGTGAGCATTAATCTGTTTCAGATCAATATATACTAATTTTACACGTTATATGCATTACAGGAAGTGTCTTTATTCAGAATCACTGAGGGATTGAGACCTAGTAACTTTCTAACTACTGTTATGTAactattgtttgtttttgtgttaatcTGTTACAAGTTACATATATAAAGTTTCACTCAAGCTCGTCTCAAACTGCGTACTCCTGTACCATTCTAAATATATTCACGCTGAGAAATACgaatttaaagaagaaaaaagtgtttgAATCTGATGATTCTCATGTACAACCCACTTACAAGTATGTTTACTAGTTTACTATGTTTTCTAGTTTACAACACAGTATACGTTTTTAAGTATTAGGTCACGGTATGCAGATTGAGACTGGCCCGTGTTCTCAGTGCACACGTCAACATTGCCAAGTCCCCCCCCAACAACAAGCACAAGATTGCGTTACATTTGTTATAACACTGTATTATGAGCTACTGttgtacatttgtatttttatactatGAACATTAAATAACATACTTTCCAACTGTTTACAAGCAACTGTTCAATTTAATAagtataaacattaaaaaaaagaaagaataaggaATATATtacataggga
>XR_003402893.2
GGTGCGTCTCTTGCAGAGTAAAGAAAGGAAGTGAAACAATTCTTTACTCtgggcacacacactcacacacacacacagactcacacacaggtttatttatttcagtatttattatttttattggatATACAGTTACAGTATAGACTTTCTGAGCAGAAACTGAGGGAACACACAGGAGGCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACAAGATCCTCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTTCTGGATCACCTGAGTTaaagtgttgtgctgttatgagACAGTGAGCGAGTGATCAGGAACTTCAGCCTTTTCCTCCTTCAACTCCCGACGAGTGTAAAAAATGTTAACCTCAGACCACGAACCAAGCAACAGCACTCCGCTGACCGAAACAACGGAGTCAGTCGACGTGGAGAAAGGCTCTGATGGTCAACACCTCGCAGCAAGAGACTACAGGAAGCTGGCTATCTGCAGCATCATATGCGGCCTGTCCTGCATTGGCATCGTGTCCCTCATTTACTCAGTTAAGACTCGAGAGTTCAACAAGAAGTCCGGTGGTGCAATATCGCAGAAAGCCAAAGAGTATTCTCAAAAAGCTCTAAAATGGGGAATAGGAGCCATCTTGGCATGGGCGGGTCTTATTCTTCTCATCCCACTGCTATTGGGACTGCTGTCGTACCTTTTGACATTTATAAACTGAAACACAGGTCATCAAAAATGCCAAATGGACAACATGTGAGCCCAAAAAGGCACAACTGAGAGTCACAGATCCccaaaaaacagacagacataggGCTCCAGTGCTGCCAAGCTGAGACAGAGACCCCAAAATCTTTCAAATCAAGGGAAATGCAGACCTGAAAATGTTGAACTAAGATGCTTGGTGCCATAAGCCCCACAACAAGAGCCAGAGGTccaaaaaacaccaaaacaaaaaaagcacagaggGGCAAGAAAAGGccaaaatgaaaacacagagtccaaaaagacagaaataaaaatcgGTGCGCCCAACAAGAGGTGTGAAGAGCCAGAGACGCACAACTGACAAGAAGCCTTAAAATGGCAAACAGAGACACTGAAGTGAGAGACATAGAGCACCAACAAGCAGAACTCGACACCAACGGCAACAAAGCGGATGATTCCACCACCACCAGGTCTAGTCCTTCTCGTCAGTAATGTGTACGGCTGAAATTTCCTTAAAATATATgttaaacaggaaggaagctattgaagaaaaattatttcagacatgtgaccctgtttggatcaactACAAAATCCAATCAGTTGGTTAAAATGATCATTCCATACAAATCCTGCAAACATTCGACAACTCATTTTTGAGATATTGCACTAATGGGAATCACGGACAGATGGAGTTTGGACACATggacaacacaaacacataatgCCTCTACCATAAAGTGGTGAAGggataataaaaatgcagaccATTATGTCTTGGACCCCTATCCCCctaccccaaaaaaaaaaatcaagagtgAAGGACGGCGAACCATAACGAAGCATGGAGACCCGAAAAACCCAAGCAGCTCCACGTAGAAGGCAACATGCATTTCTGGGCAGAATTTGCACTCCTAAGATAAAGTCTCTCTCATTTGGACAGCAGTTGCTCATTTTGGACAAAACAACTGACCCAAAAGCGGGACAGTTAAGATgaagcttgctttttttttttccacggcGTCGGAATTCTAGAGTGCGCATTAACTTTTCTCACCTGATGGACCAGTGAGCATTAATCTGTTTCAGATCAATATATACTAATTTTACACGTTATATGCATTACAGGAAGTGTCTTTATTCAGAATCACTGAGGGATTGAGACCTAGTAACTTTCTAACTACTGTTATGTAactattgtttgtttttgtgttaatcTGTTACAAGTTACATATATAAAGTTTCACTCAAGCTCGTCTCAAACTGCGTACTCCTGTACCATTCTAAATATATTCACGCTGAGAAATACgaatttaaagaagaaaaaagtgtttgAATCTGATGATTCTCATGTACAACCCACTTACAAGTATGTTTACTAGTTTACTATGTTTTCTAGTTTACAACACAGTATACGTTTTTAAGTATTAGGTCACGGTATGCAGATTGAGACTGGCCCGTGTTCTCAGTGCACACGTCAACATTGCCAAGTCCCCCCCCAACAACAAGCACAAGATTGCGTTACATTTGTTATAACACTGTATTATGAGCTACTGttgtacatttgtatttttatactatGAACATTAAATAACATACTTTCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242330 False 2397 TUCP 0.41 4 3192712 3200133
XR_003402893.2 True 2403 lncRNA 0.42 3 3192704 3200055

Neighbor

gene id symbol gene type direction distance location
zgc:113090 NA coding upstream 9801 3177549 ~ 3182903 (+)
kat7a LOC108275911,LOC108437993,LOC107689642,LOC107554133,LOC107737751 coding upstream 18419 3159933 ~ 3174285 (+)
LOC113528048 cacng2a,cacng2,LOC108275959,LOC107732897,LOC107680886,LOC107561356,LOC107687643,LOC107729558,LOC108434911 coding upstream 46522 3088362 ~ 3146182 (+)
mpp2a mpp2a,LOC108276091,LOC108434916,LOC107582977,LOC107737744,LOC107758486 coding upstream 161540 3014983 ~ 3031164 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding upstream 209613 2914258 ~ 2983091 (+)
zgc:153733 LOC108275998 coding downstream 21140 3221273 ~ 3231214 (+)
mylpfa mylpf,mylpfa,LOC107582990,LOC108249004,LOC108443170 coding downstream 35906 3236039 ~ 3241987 (+)
LOC117598988 tlr-5,LOC108275978,LOC108275971 coding downstream 75915 3276048 ~ 3289441 (+)
LOC117598751 tlr-5,LOC108275971,LOC108275978 coding downstream 90429 3290562 ~ 3297596 (+)
LOC113528556 LOC108277488,LOC108437999,LOC107721491,LOC107720004,LOC107590377,LOC107688123,LOC107601225,LOC107654455 coding downstream 117190 3317323 ~ 3352852 (+)
G204417 NA non-coding upstream 119978 3064905 ~ 3072726 (+)
G204410 NA non-coding upstream 156541 3034271 ~ 3036163 (+)
G204362 NA non-coding upstream 421394 2770686 ~ 2771310 (+)
G204323 NA non-coding upstream 455418 2544989 ~ 2737286 (+)
G204333 NA non-coding upstream 468895 2656576 ~ 2723809 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding downstream 15654 3215787 ~ 3218884 (+)
G204678 NA non-coding downstream 153165 3353298 ~ 3356906 (+)
G204679 NA non-coding downstream 199636 3399769 ~ 3403347 (+)
G204771 NA non-coding downstream 387769 3587902 ~ 3590031 (+)
G204790 NA non-coding downstream 445630 3645763 ~ 3646675 (+)
pyya LOC108276154,LOC108434917 other upstream 179845 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 284661 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1006540 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1204789 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 1303189 1883052 ~ 1889515 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 334156 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 766600 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 771046 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 1420085 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1492344 4692477 ~ 4711316 (+)

Expression


Co-expression Network