G204773


Basic Information

Item Value
gene id G204773
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3672984 ~ 3715580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242530
tttaagaatttttttattgcttgGCCTGCCATTGGGATGATCGATACCAAAAAAGGGTTACAACATCAGCACGataaaaagggaagaaaaaagaagaaaaaaaaaaaaaaaaaaaaaaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242530 True 122 lncRNA 0.29 3 3672984 3715580

Neighbor

gene id symbol gene type direction distance location
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding upstream 33113 3630439 ~ 3639871 (+)
ppl ppl,LOC107720077 coding upstream 112306 3541110 ~ 3560678 (+)
rrn3 rrn3,LOC104947155 coding upstream 172556 3485744 ~ 3500428 (+)
si:dkeyp-72e1.6 LOC108274424 coding upstream 189236 3480238 ~ 3483748 (+)
mpv17l LOC108256073 coding upstream 195659 3470453 ~ 3477325 (+)
slc16a6b LOC108259325 coding downstream 8183 3723763 ~ 3733885 (+)
LOC113528497 NA coding downstream 21880 3737460 ~ 3742455 (+)
LOC113527907 LOC108259599 coding downstream 31921 3747501 ~ 3756184 (+)
rnf113a rnf113a,LOC107693494 coding downstream 194625 3910205 ~ 3916855 (+)
ddx42 ddx42,LOC102777021 coding downstream 219816 3935396 ~ 3947545 (+)
G204774 NA non-coding upstream 23446 3648189 ~ 3649538 (+)
G204790 NA non-coding upstream 26309 3645763 ~ 3646675 (+)
G204771 NA non-coding upstream 82953 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 269637 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 316078 3353298 ~ 3356906 (+)
G204815 NA non-coding downstream 61024 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 137916 3853496 ~ 3882959 (+)
LOC113528035 NA non-coding downstream 140474 3856054 ~ 3868097 (+)
G204860 NA non-coding downstream 149333 3864913 ~ 3869743 (+)
G204912 NA non-coding downstream 390363 4105943 ~ 4107728 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 11820 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 472851 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 660125 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 764941 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1486820 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 251153 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 255599 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 904638 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 976897 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 997293 4712873 ~ 4721468 (+)

Expression


Co-expression Network