G204790


Basic Information

Item Value
gene id G204790
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3645763 ~ 3646675 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242550
CAGTCCTagagaaagaggcgtggcctctgtgcccaTCAGTCctagagaaggaggcgtggcctctgtgcccaTCAGTCctagagaaggaggcgtggcctctgggGCCATCAGTCctagagaaggaggcgtggcctctgtgcccaTCAGTCCTAGAGAAAGAGGCATGACCTCTGTGCCCGTCAGTCctagagaaggaggcgtggcatcTGTGCCCGTGAGTCCTagagaaagaggcgtggcctctgggGCCATCAGTCCTAGAgaaagaggcgtggcttctgGGCCCCTCAGTCCTagagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242550 True 301 lncRNA 0.60 2 3645763 3646675

Neighbor

gene id symbol gene type direction distance location
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding upstream 5892 3630439 ~ 3639871 (+)
ppl ppl,LOC107720077 coding upstream 85085 3541110 ~ 3560678 (+)
rrn3 rrn3,LOC104947155 coding upstream 145335 3485744 ~ 3500428 (+)
si:dkeyp-72e1.6 LOC108274424 coding upstream 162015 3480238 ~ 3483748 (+)
mpv17l LOC108256073 coding upstream 168438 3470453 ~ 3477325 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding downstream 38803 3685478 ~ 3692367 (+)
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding downstream 48054 3694729 ~ 3714082 (+)
slc16a6b LOC108259325 coding downstream 77088 3723763 ~ 3733885 (+)
LOC113528497 NA coding downstream 90785 3737460 ~ 3742455 (+)
LOC113527907 LOC108259599 coding downstream 100826 3747501 ~ 3756184 (+)
G204771 NA non-coding upstream 55732 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 242416 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 288857 3353298 ~ 3356906 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding upstream 426879 3215787 ~ 3218884 (+)
G204417 NA non-coding upstream 573037 3064905 ~ 3072726 (+)
G204774 NA non-coding downstream 1514 3648189 ~ 3649538 (+)
G204773 NA non-coding downstream 26309 3672984 ~ 3715580 (+)
G204815 NA non-coding downstream 129929 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 206821 3853496 ~ 3882959 (+)
LOC113528035 NA non-coding downstream 209379 3856054 ~ 3868097 (+)
LOC113527909 NA other upstream 445630 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 632904 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 737720 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1459599 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1657848 1917205 ~ 1987915 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 320058 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 324504 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 973543 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1045802 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 1066198 4712873 ~ 4721468 (+)

Expression


Co-expression Network