Item | Value |
---|---|
gene id | kcnc3a |
gene name | kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047607.1 |
NCBI id | CM018553.1 |
chromosome length | 26458119 |
location | 3768855 ~ 3865849 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
kcnc3a | Enables voltage-gated potassium channel activity. Acts upstream of or within motor neuron axon guidance. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 13. Orthologous to human KCNC3 (potassium voltage-gated channel subfamily C member 3). |
description |
---|
PREDICTED: potassium voltage-gated channel subfamily C member 1-like isoform X5 |
id | name | namespace |
---|---|---|
GO:0071805 | potassium ion transmembrane transport | biological_process |
GO:0034765 | regulation of ion transmembrane transport | biological_process |
GO:0051260 | protein homooligomerization | biological_process |
GO:0008045 | motor neuron axon guidance | biological_process |
GO:0008076 | voltage-gated potassium channel complex | cellular_component |
GO:0005251 | delayed rectifier potassium channel activity | molecular_function |
id | description |
---|---|
K04889 | KCNC3, KV3.3; potassium voltage-gated channel Shaw-related subfamily C member 3 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU242898 | False | 6382 | lncRNA | 0.37 | 2 | 3768855 | 3776450 |
TU242900 | False | 6358 | lncRNA | 0.37 | 3 | 3768855 | 3776450 |
XM_026916270.2 | False | 3153 | mRNA | 0.58 | 6 | 3783563 | 3865847 |
XM_026916271.2 | False | 2992 | mRNA | 0.58 | 5 | 3783563 | 3865707 |
XM_026916272.2 | False | 2992 | mRNA | 0.59 | 6 | 3783829 | 3865847 |
XM_026916273.2 | False | 3354 | mRNA | 0.56 | 5 | 3776896 | 3865704 |
XM_034309831.1 | False | 7375 | mRNA | 0.48 | 5 | 3792584 | 3865849 |
XM_034309832.1 | False | 7285 | mRNA | 0.48 | 6 | 3792584 | 3865849 |
XM_034309833.1 | True | 7949 | mRNA | 0.47 | 5 | 3776896 | 3865706 |
XM_034309835.1 | False | 3390 | mRNA | 0.56 | 6 | 3776896 | 3865705 |
XM_034309836.1 | False | 4037 | mRNA | 0.53 | 5 | 3773583 | 3865700 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC113528389 | tlr-20a | coding | downstream | 7867 | 3756985 ~ 3760988 (-) |
prkar1aa | prkar1a,LOC107654492,LOC107721504,LOC107708993,LOC108274040,LOC103038385,LOC107693667 | coding | downstream | 85532 | 3672980 ~ 3683323 (-) |
rac3a | rac3,rac3a,rac3b,LOC106610298,LOC108436959,LOC100712409 | coding | downstream | 99553 | 3658456 ~ 3669302 (-) |
gps1 | gps1,LOC107654488,LOC107721507,LOC107688111 | coding | downstream | 111568 | 3641541 ~ 3657287 (-) |
csnk1da | csnk1d,LOC108259482,LOC103024472,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC108435268,LOC107566590 | coding | downstream | 145768 | 3587950 ~ 3623087 (-) |
zgc:193811 | LOC108259531 | coding | upstream | 2730 | 3868579 ~ 3879880 (-) |
lin7b | lin7b,LOC107730776 | coding | upstream | 16279 | 3882128 ~ 3888471 (-) |
snrnp70 | snrnp70 | coding | upstream | 25325 | 3891174 ~ 3901444 (-) |
pex11a | pex11a | coding | upstream | 38938 | 3904787 ~ 3907427 (-) |
strada | strada,LOC107693497 | coding | upstream | 51823 | 3917672 ~ 3932820 (-) |
G205063 | NA | non-coding | downstream | 29896 | 3704283 ~ 3738959 (-) |
G205040 | dus1l,LOC102781131 | non-coding | downstream | 137472 | 3630694 ~ 3631383 (-) |
G205030 | NA | non-coding | downstream | 148736 | 3617171 ~ 3620119 (-) |
G205038 | NA | non-coding | downstream | 166616 | 3601002 ~ 3602239 (-) |
G204664 | NA | non-coding | downstream | 594578 | 3171262 ~ 3174277 (-) |
G205145 | NA | non-coding | upstream | 83000 | 3948849 ~ 3957710 (-) |
LOC117598833 | NA | non-coding | upstream | 124557 | 3990406 ~ 3990917 (-) |
G205169 | gfap,LOC107658466,LOC107729544 | non-coding | upstream | 168047 | 4033896 ~ 4035077 (-) |
G205165 | NA | non-coding | upstream | 236507 | 4102356 ~ 4104225 (-) |
G205155 | NA | non-coding | upstream | 263292 | 4129141 ~ 4131967 (-) |
nde1 | nde1 | other | downstream | 355088 | 3382831 ~ 3413767 (-) |
si:dkey-283b1.7 | LOC108276203,LOC107737768,LOC104929916,LOC106607185 | other | downstream | 690837 | 3073977 ~ 3078018 (-) |
si:dkey-283b1.6 | NA | other | downstream | 729203 | 3034246 ~ 3039652 (-) |
LOC113528062 | LOC108276032,LOC108276106 | other | downstream | 1230744 | 2433149 ~ 2538111 (-) |
LOC113528223 | LOC108276032,LOC108261353,LOC108261342 | other | downstream | 1423943 | 2331676 ~ 2344912 (-) |
G205173 | gfap,LOC103392664 | other | upstream | 174632 | 4040481 ~ 4044575 (-) |
dcaf7 | dcaf7,LOC100702343,LOC105030232 | other | upstream | 227064 | 4092913 ~ 4117643 (-) |
mlx | mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 | other | upstream | 856568 | 4722417 ~ 4734902 (-) |
G205633 | rps11,LOC102786880,LOC107674708 | other | upstream | 1223487 | 5089336 ~ 5091922 (-) |
G206236 | NA | other | upstream | 1888918 | 5754767 ~ 5756733 (-) |