G205217


Basic Information

Item Value
gene id G205217
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4210435 ~ 4210598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243055
GTAACTCGGGATTGTGGCAGTTTGTAAAGTTTTGAGACTCATCTATCTGGATGACTTTCACCTTGGAGTCCTTATTTACCGTGCAAATGTTGATCAGGTGTCTGTTTCAGTGACCCTACTTGCTTTGTCTCCACTGGCAACAATTAATCCCAGCATTCTTTCag

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU243055 True 164 lncRNA 0.43 1 4210435 4210598

Neighbor

gene id symbol gene type direction distance location
mylk5 LOC108256285 coding downstream 17844 4152059 ~ 4192591 (-)
strada strada,LOC107693497 coding downstream 277615 3917672 ~ 3932820 (-)
pex11a pex11a coding downstream 303008 3904787 ~ 3907427 (-)
snrnp70 snrnp70 coding downstream 308991 3891174 ~ 3901444 (-)
lin7b lin7b,LOC107730776 coding downstream 321964 3882128 ~ 3888471 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding upstream 631 4211229 ~ 4213733 (-)
ccdc43 ccdc43 coding upstream 16567 4227165 ~ 4233963 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding upstream 148701 4359299 ~ 4394529 (-)
ramp2 ramp2 coding upstream 288300 4498898 ~ 4514637 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding upstream 352780 4563378 ~ 4590665 (-)
G205211 NA non-coding downstream 4136 4206100 ~ 4206299 (-)
G205155 NA non-coding downstream 78468 4129141 ~ 4131967 (-)
G205165 NA non-coding downstream 106210 4102356 ~ 4104225 (-)
G205169 gfap,LOC107658466,LOC107729544 non-coding downstream 175358 4033896 ~ 4035077 (-)
LOC117598833 NA non-coding downstream 219518 3990406 ~ 3990917 (-)
G205226 NA non-coding upstream 13209 4223807 ~ 4224133 (-)
G205244 NA non-coding upstream 142887 4353485 ~ 4354384 (-)
G205246 NA non-coding upstream 145718 4356316 ~ 4356562 (-)
G205266 NA non-coding upstream 175930 4386528 ~ 4386748 (-)
G205269 NA non-coding upstream 186475 4397073 ~ 4397301 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 92792 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 165860 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 344586 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 796668 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 1132417 3073977 ~ 3078018 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 511819 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 878738 5089336 ~ 5091922 (-)
G206236 NA other upstream 1544169 5754767 ~ 5756733 (-)
G206282 NA other upstream 1630539 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 1730264 5940862 ~ 5950997 (-)

Expression


Co-expression Network