G205244


Basic Information

Item Value
gene id G205244
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4353485 ~ 4354384 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243086
aaaaacgGTACTAAACTGTATCATGAAGATCAAAAGcttttccttgtcgctggggtggtacccttaTGTTTTGTACcgttaatatgtatctttcataAAATTTTGCCTTTGAGAGTTTTAAACCTACACCATACACAccttctaggtaaaagatacatactgaAGGTGTACGCTTGAAGATAGCACACTAGCGACAAGGAAATGTACAGTTTAGTACAGTTTAGAATGAGGAGCAGCTCACATCttgaaaaaaatgctgatgtttgattcacttcctgcaggtgagtcgattcagagtcgaatcactttctcgCTGCAATTGATTCGTTCTAGAGTTCACTTGGAATTTTTGCTCTGTACTGTATTTAGGCCCCAAATTATACAGTCTCCTCTTTTCAGCCCTCAGAGCTCTTGTGTCCTGTTCTGCCGTTTGTAAGGGTGCAGTTTTAGTGCAGGTTAAAGCAGCTgggtgacctctgacctcagcACAATGTATAGAACACGgggacagagacaaagaaaaagaaagtaaagtagaagaagaagaagttaaTCTCCTCCTGCGGCGTCCCCACGGGTCACTTCTACACACTCACGACGGGACGCTGATGTGATACGACACGGTGACAGTCTGCAGCCGAAGGAAGCTGATCTGttcaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccagacaAGCCTTCATGCATGCACTGAAAATCTCCTCAGCCGCATCACTGATTActgttcacacaaacacatttcagcCAGTCCATGTTCTAATCAGCCAATGAGATTGCAGCGTGAgggatgaaataaataaatcgacTCTTGAGAAGAAATGAGAACAATAAAGCtatgaaaggaaatgaaatgtaCGTGTATGTTGGTCCGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243086 True 900 lncRNA 0.43 1 4353485 4354384

Neighbor

gene id symbol gene type direction distance location
ccdc43 ccdc43 coding downstream 119522 4227165 ~ 4233963 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding downstream 139752 4211229 ~ 4213733 (-)
mylk5 LOC108256285 coding downstream 160894 4152059 ~ 4192591 (-)
strada strada,LOC107693497 coding downstream 420665 3917672 ~ 3932820 (-)
pex11a pex11a coding downstream 446058 3904787 ~ 3907427 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding upstream 4915 4359299 ~ 4394529 (-)
ramp2 ramp2 coding upstream 144514 4498898 ~ 4514637 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding upstream 208994 4563378 ~ 4590665 (-)
tubg1 tubg1,LOC107721485 coding upstream 317371 4671755 ~ 4690497 (-)
si:ch211-278a6.1 srcin1 coding upstream 419295 4773679 ~ 4935981 (-)
G205226 NA non-coding downstream 129352 4223807 ~ 4224133 (-)
G205217 NA non-coding downstream 142887 4210435 ~ 4210598 (-)
G205211 NA non-coding downstream 147186 4206100 ~ 4206299 (-)
G205155 NA non-coding downstream 221518 4129141 ~ 4131967 (-)
G205165 NA non-coding downstream 249260 4102356 ~ 4104225 (-)
G205246 NA non-coding upstream 1932 4356316 ~ 4356562 (-)
G205266 NA non-coding upstream 32144 4386528 ~ 4386748 (-)
G205269 NA non-coding upstream 42689 4397073 ~ 4397301 (-)
G205291 NA non-coding upstream 150814 4505198 ~ 4507712 (-)
G205293 NA non-coding upstream 160552 4514936 ~ 4515138 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 235842 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 308910 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 487636 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 939718 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 1275467 3073977 ~ 3078018 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 368033 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 734952 5089336 ~ 5091922 (-)
G206236 NA other upstream 1400383 5754767 ~ 5756733 (-)
G206282 NA other upstream 1486753 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 1586478 5940862 ~ 5950997 (-)

Expression


Co-expression Network