G205299


Basic Information

Item Value
gene id G205299
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4549561 ~ 4551865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243143
agaaaaaaagaaccatACAAGCCGACAGGGTGAATGTGCACTTCGAGTTAATGATGACGAAGGAAAGAAATGTTTGAGATTCGTTTgtagggtcttttttttttttttaaataaaaacaaaaaaacaaaaaggagagAGTAGGTTCTATGATTCTTACCCTTTTTGTAAGTGTTAAATAATGAGCTAAACCAAACTAAATCCACCATACTGACTGACTATTTAGCATGTTTTCCACACGGAAGATTTGAGAAGGCTGCGAATACGTTAACCACGTTAACCACAATTTCTGGAATATTAAAGAAagcatgctaaaaaaaaagaacacaaaacatAATGCATTATCATATTAATTGCAGAATCAGTTTAATCCTATTAACCACACATAATCTTTAGTACATAATATTTGTGCATCATAGTGCTTGGTATGATATTTCACTTCTATTATGTTTAGCTCCATTTTTACCGAATTGACCTCCTCAAATCTTCCGCTAAAGGAACGTTACGTACCACTCTACAACGCATCTCTTACATGTATCTTAAGGTACTGATTTATATACGTAACATTCACATCATTATCATAAGGAACTAAATCACAGCGATTAGGAAGTAATCTCATACACCCAGCTGTGGTGGTATTTAGCATCACAAACATCATACATATACTAAATCCAATAAGAAAGCAGAAAATCATACACGATTCTTCGTTTTCTCTTTATCTGCTgatcatatttatatacagtatatgggtCAAAGACAAGACTTtaggaaaggttttttttttttttttttttttttttttgcctcaaggcttttcattttacagaaaattattaatatgcataGATATTAAATATCATTCCACTGAATTTAGCTTTCAAACATGTTTACAACAGTACAtattaagaaagaaataaagttttGAAGGGAAAATTTTGTATTTCAGAGTAAATATTCACATTACTGTACTAATACCAAGAATAAAAGGtatttagtgctccaaatgttcatatctgtatttggcTTTAAATCCGAAATGGGTGtggcttaatttttttattttttttatttttttattttttaaataaaccctaCACCCCTGGAATCAATAGAAAACACCGGGGGGAAAACCTCAGATCCTGTTGACAGTGATGATGTGTGAATTGTGACTcttgacagttcctcaacctcaactacatcactccagttcacaACTGACTTAAATGGAGATGTGCGCCTGCAtcgcatgaaagtaaaaacctcctacTTGTGTGACTTTTGCATGCTGTTACATCCagcaggatcccagtcctgatgggATCTGTTCTGTTCTCAAATAGATGCCATTTCtggaacaacaaaaacaaatagtgTGCTTTCTATTTGTATCCGCGCTGTTCtgatctgttcattccaaataatgtattcgtatTGTTACTATTGCAGAATctggtggggtttttttgtttgtttgtttgtttttgaccCATATATAGTCATCCTTGACTTTCCATTTTGAGACTTAAGAATTCGTCTTTCCAAAATGTCCTTTTGTTTTGGATTGCCATGGTGGTTTCCTTCAGAATTCATGGAGTTTTCCtgcttgttttatttccttGCCAAGCACACATAGCAAAGATGGAGGGTGCAACGGAAAGGAAAAGAGGATGAGAGTGATAGTGTAGTAGAGGCCTTTCTAGGCCGCATACCTGAGGTCATGGTTACGGCTTTGCTATTGGTTCTCAGCAATGACATGAGCAAACTGGAATATTAGGAAATCGCCATGGTGGTCCTCCAATCAGTCGTATTCaccttttttttggttaaaagaaaaaattaaagccTACCTTACAATGTTGTGTTCATTTAACTGTCACTTCTTTTACTATTATCTTTCCTGTGTTCATGTCAAGACATCCTTTACCTTCTGAAGAAGTCTTCCCATTTCAATATGTGCCAAATATGAGATACGCTGACTCAGAAAGCAAAGTGGAATCCATAACgctttaaaaattaattattaccTTTATCTTTTggaatttattacatttctatacatttcAAGTTCCCTTTTTGTCAAatagtttttcatttaatatattatacatgtaCAATGATACAATAAAATACTGATATCCAAGGTCTAAAAGTTTTGAGactgaatattattatataatattatttctcTACTACGTATATGTGGTCATTGATTACGCCAACCTACTCTTTATAAAAAGAGAGCTCTGTCAGGTGACTGAAATGCCATGGAAGTTAGACGTGTATGTGAAAGCAAGCAGGTCTGTGTat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243143 True 2305 lncRNA 0.34 1 4549561 4551865

Neighbor

gene id symbol gene type direction distance location
ezh1 ezh1 coding upstream 83 4527593 ~ 4549478 (+)
moto meioc coding upstream 323516 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 418086 4120854 ~ 4131475 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding upstream 444807 4057751 ~ 4104754 (+)
gfap gfap,LOC107729544 coding upstream 505186 4034566 ~ 4044375 (+)
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding downstream 185176 4737041 ~ 4770496 (+)
LOC113528572 NA coding downstream 418957 4970822 ~ 4974830 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding downstream 430161 4982026 ~ 4991251 (+)
map3k14a LOC108259239 coding downstream 506057 5057922 ~ 5078370 (+)
rps11 rps11,LOC107674708 coding downstream 537398 5089263 ~ 5091817 (+)
G205303 NA non-coding upstream 11406 4537498 ~ 4538155 (+)
G205263 NA non-coding upstream 155303 4393925 ~ 4394258 (+)
G205250 NA non-coding upstream 189187 4359405 ~ 4360374 (+)
G205245 NA non-coding upstream 193025 4356318 ~ 4356536 (+)
G205242 NA non-coding upstream 193375 4355539 ~ 4356186 (+)
G205306 NA non-coding downstream 11543 4563408 ~ 4563654 (+)
G205315 NA non-coding downstream 119895 4671760 ~ 4673029 (+)
G205436 NA non-coding downstream 342675 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding downstream 372049 4923914 ~ 4925682 (+)
G205454 NA non-coding downstream 528122 5079987 ~ 5081204 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 563277 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other upstream 578311 3971179 ~ 3971250 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 888397 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 1349428 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 1536702 3003608 ~ 3012859 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 68353 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 140612 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 161008 4712873 ~ 4721468 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 451683 5003548 ~ 5014516 (+)
G206166 NA other downstream 1105747 5657612 ~ 5660848 (+)

Expression


Co-expression Network