G205315


Basic Information

Item Value
gene id G205315
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4671760 ~ 4673029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243159
TtagaaaatcatttatttaagtgAACACAAACTATTTACAGTAGAAAAAAATGCGCGGGTAGAGAGAAGGAGTAGCTCTGAGAACACAAGGCTCAGTATGAAAGACCACGGGAAGGGACAGAAAAATAGAAACCTTATATTTAACACTGAGGAACCTGTGAGATTTTCTAAAAGACCTTTTTAATCTGCAGTATTTTAAGGAAACCTTTATTCAATCCTGCACAGGTTCCCAATCCTGGTCCTCGTGTTTTTGCTGCTCtgacacacctgattcaactcatcagctcATTCCTGAGctgcagtgagtgtgttagagggaattaaacactaaaatgtgcagggaTTCTCTTCAGGATTTATTAATACACACTGGTCTCAGATCAGCCGTCTCACTACGACTGCATGCCCTCTAGATTATAAAGACTTAATGACTGATTTTAAGGATTCTCTCAGAGCTCCGATAGTCTTCTGGAAACCACTGACGCTAAAGATGGGTGTGGTTTTATTCCTGATTATCAGCGAGATGAATTGTCTTATTAAAAGCTTCAAACTTAAATGATAATCAATCCCTAAAAAGCCACAGCACTACTTCGTAAAggaaaaacgtgtgtgtgtgtgtgtgtgttaaacaggaAAGTGCACTCAAGGATCTTTTATGTCTTTGCCCTTTTCTCTCAGTCAGGCTTATCATTTTTCCGCTCCACCCTTTCGTCCCTGTTTTTCCTACAGAGCTGCTTTCAGAGTCGTCCCTGTGAGACCACCCTGCCTTATCTGCTTACTCAGGACCCTGTATGTGTgacagcaagtgtgtgtgcgtgtgtgtggtgaaatGAAGGAGTGATGGATAAAGGCTTTAACAACagactgaaaaagagagagagagagagagagagagagagagaaaagatactgatatacttgtatatacacTAAAGTGCACACACTCTCGTCTtgttcacacacaaacaattaaaTGCAGACAAACAATTGAGTCCAGGACCtctgagtgtatgtgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgttactgctcCTGTGCACCCCAGGAGATGTAGTCGGGCCGTGTAGCGGCGCTGTACTCGTCGATCAGGTGCTGCACCACCTCGCGCGAGTCGTCCAGCTCATCGAAGTTGTCCTTGAACATGTCCTCCTTGCGGAACTGCTCGAGGAAAGCCTCGCGCTTGCGCAGCTTGTCGTACTGACGGCACGTCCTCTCGAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243159 True 1250 lncRNA 0.44 2 4671760 4673029

Neighbor

gene id symbol gene type direction distance location
ezh1 ezh1 coding upstream 122282 4527593 ~ 4549478 (+)
moto meioc coding upstream 445715 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 540285 4120854 ~ 4131475 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding upstream 567006 4057751 ~ 4104754 (+)
gfap gfap,LOC107729544 coding upstream 627385 4034566 ~ 4044375 (+)
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding downstream 64012 4737041 ~ 4770496 (+)
LOC113528572 NA coding downstream 297793 4970822 ~ 4974830 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding downstream 308997 4982026 ~ 4991251 (+)
map3k14a LOC108259239 coding downstream 384893 5057922 ~ 5078370 (+)
rps11 rps11,LOC107674708 coding downstream 416234 5089263 ~ 5091817 (+)
G205306 NA non-coding upstream 108106 4563408 ~ 4563654 (+)
G205299 NA non-coding upstream 119895 4549561 ~ 4551865 (+)
G205303 NA non-coding upstream 133605 4537498 ~ 4538155 (+)
G205263 NA non-coding upstream 277502 4393925 ~ 4394258 (+)
G205250 NA non-coding upstream 311386 4359405 ~ 4360374 (+)
G205436 NA non-coding downstream 221511 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding downstream 250885 4923914 ~ 4925682 (+)
G205454 NA non-coding downstream 406958 5079987 ~ 5081204 (+)
G206157 NA non-coding downstream 956429 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 1062341 5735370 ~ 5735607 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 1114 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 685476 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other upstream 700510 3971179 ~ 3971250 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 1010596 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 1471627 3192704 ~ 3200133 (+)
retreg3 fam134c other downstream 19448 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 39844 4712873 ~ 4721468 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 330519 5003548 ~ 5014516 (+)
G206166 NA other downstream 984583 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 1216523 5889552 ~ 5898200 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G431764 NA non-coding CI01000306 null 1508586 ~ 1512270 (-)
mexican tetra (Astyanax mexicanus) G323481 NA non-coding NW_019172896.1 APWO02000090.1 387698 ~ 407335 (+)