G205454


Basic Information

Item Value
gene id G205454
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5079987 ~ 5081204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243315
agagaaaacagctCAATCCAGCGTAATTCATACAATTATACAAACATTaagaaaagacaggaaaatggTGCTTGTATCAAAGTGGATTTATAATAAAAAGGCCAAGGCACTGTCAACAtaagaagaaaatattttttaaaaacatattgtattcaaataacacaaaatgagAAGGTGTATAAAAGTGTGATTGCATGTGATTGGGTTTTGAATAATCAAGGAAAAAAGTACAGTACTAAGACCACTTTGAGAAGACCGGGTCGATGTCTATGTGCAAGTGTGTACTTTCTAacgagacacacacatacctctTCACACCAAGGGAGCTTGCAGCAAACTGGAATATTTGGAGTATCTATTGCTCTTTAATCCAGCAGGTTGATCGAATtcaaaattgtgaaaaaaaatctgagctccaagttttatataaatttatataaagttTTAGATGACTGTTAGAGCATTTTCTGTCCTATTCTGGGTCCGAGCACACCACTCACTAACTGGCTCATATCTGTGAGAAACTGGTAAGGAACCCAACCAGGACTCATATAAAATCCCTGCATTATTAGATTGTCATTAACTCTTATTCTCAGTCAAAGCTGCAAACCCCCATAGTGCCTCTGCATATGAGTTCAGCACCAAAATCACAACTGtgtccccacacacacccacacccacacccacgcacacgcacatgcacacgcacatgcacacgcatACACGCATACACGCTCGCTAGTAGGACTATCTGGGTGTTGAgatgaaaggaaggaaagagagaaagaacaaggGAGACAGAGAAGAGTACCTCCTGAACCTACTGCTATCAATTACAACTTCAgatgacatttataaaaaaaaaaaaaaaaaaaaaaaaaaaaagacattatgaGGTAAAATATCGATGGCATGCTTATAAAGCCTTTATAAACCCTTTGCAAGGAGTAAGTATGTGCAATTCCTATGTGTGTTCATTGCAAGGAGAGAGTGATTCAAGTAGGCATGCAGATCATTTCCTAGGACAGGAAGAGTCTGTCAATTCCTTCAAAAGTCTAATCTAAACATCTAATCTACTCCATATATAAAGACAAAGACAATTACTTTTTACTTTGCctgatgatgaaaataaataacgTAAAACTAAGGCCCAACACAACCTCCTGCACATCCCTCAGTCCGTCtctcttttgtttccttttttcagtgcatgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243315 True 1218 lncRNA 0.38 1 5079987 5081204

Neighbor

gene id symbol gene type direction distance location
map3k14a LOC108259239 coding upstream 1617 5057922 ~ 5078370 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding upstream 88736 4982026 ~ 4991251 (+)
LOC113528572 NA coding upstream 105157 4970822 ~ 4974830 (+)
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding upstream 309491 4737041 ~ 4770496 (+)
ezh1 ezh1 coding upstream 530509 4527593 ~ 4549478 (+)
rps11 rps11,LOC107674708 coding downstream 8059 5089263 ~ 5091817 (+)
LOC113528651 NA coding downstream 8994 5090198 ~ 5090283 (+)
LOC113528648 NA coding downstream 9316 5090520 ~ 5090604 (+)
LOC113528650 NA coding downstream 9628 5090832 ~ 5090916 (+)
LOC113528649 NA coding downstream 10044 5091248 ~ 5091332 (+)
G205436 NA non-coding upstream 82191 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding upstream 154305 4923914 ~ 4925682 (+)
G205315 NA non-coding upstream 406958 4671760 ~ 4673029 (+)
G205306 NA non-coding upstream 516333 4563408 ~ 4563654 (+)
G205299 NA non-coding upstream 528122 4549561 ~ 4551865 (+)
G206157 NA non-coding downstream 548254 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 654166 5735370 ~ 5735607 (+)
G206221 NA non-coding downstream 673648 5754852 ~ 5756939 (+)
LOC117599005 NA non-coding downstream 787658 5868862 ~ 5869806 (+)
G206289 NA non-coding downstream 837241 5918445 ~ 5925185 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 65471 5003548 ~ 5014516 (+)
psmc3ip psmc3ip other upstream 358519 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 368671 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 409341 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 1093703 3966733 ~ 3986284 (+)
G206166 NA other downstream 576408 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 808348 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 1049576 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 1079130 6160334 ~ 6175366 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other downstream 1098892 6180096 ~ 6194964 (+)

Expression


Co-expression Network