G205481


Basic Information

Item Value
gene id G205481
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4549561 ~ 4551868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243342
tccatACACAGACCTGCTTGCTTTCACATACACGTCTAACTTCCATGGCATTTCAGTCACCTGACAGAGCTCTCTTTTTATAAAGAGTAGGTTGGCGTAATCAATGACCACATATACGTAGTAgagaaataatattatataataatattcagtCTCAAAACTTTTAGACCTTGGATATCAGTATTTTATTGTATCATTGtacatgtataatatattaaatgaaaaactatTTGACAAAAAGGGAACTTgaaatgtatagaaatgtaataaattccAAAAGATAAAggtaataattaatttttaaagcGTTATGGATTCCACTTTGCTTTCTGAGTCAGCGTATCTCATATTTGGCACATATTGAAATGGGAAGACTTCTTCAGAAGGTAAAGGATGTCTTGACATGAACACAGGAAAGATAATAGTAAAAGAAGTGACAGTTAAATGAACACAACATTGTAAGGTAggctttaattttttcttttaaccaaaaaaaaggtGAATACGACTGATTGGAGGACCACCATGGCGATTTCCTAATATTCCAGTTTGCTCATGTCATTGCTGAGAACCAATAGCAAAGCCGTAACCATGACCTCAGGTATGCGGCCTAGAAAGGCCTCTACTACACTATCACTCTCATCCTCTTTTCCTTTCCGTTGCACCCTCCATCTTTGCTATGTGTGCTTGGCaaggaaataaaacaagcaGGAAAACTCCATGAATTCTGAAGGAAACCACCATGGCAATCCAAAACAAAAGGACATTTTGGAAAGACGAATTCTTAAGTCTCAAAATGGAAAGTCAAGGATGACTATATATGggtcaaaaacaaacaaacaaacaaaaaaaccccaccagATTCTGCAATAGTAACAatacgaatacattatttggaatgaacagatcaGAACAGCGCGGATACAAATAGAAAGCAcactatttgtttttgttgttccaGAAATGGCATCTATTTGAGAACAGAACAGATcccatcaggactgggatcctgctGGATGTAACAGCATGCAAAAGTCACACAAgtaggaggtttttactttcatgcgaTGCAGGCGCACATCTCCATTTAAGTCAGTtgtgaactggagtgatgtagttgaggttgaggaactgtcaagAGTCACAATTCACACATCATCACTGTCAACAGGATCTGAGGTTTTCCCCCCGGTGTTTTCTATTGATTCCAGGGGTGtagggtttatttaaaaaataaaaaaataaaaaaaataaaaaaattaagccaCACCCATTTCGGATTTAAAgccaaatacagatatgaacatttggagcactaaataCCTTTTATTCTTGGTATTAGTACAGTAATGTGAATATTTACTCTGAAATACAAAATTTTCCCTTCaaaactttatttctttcttaataTGTACTGTTGTAAACATGTTTGAAAGCTAAATTCAGTGGAATGATATTTAATATCtatgcatattaataattttctgtaaaatgaaaagccttgaggcaaaaaaaaaaaaaaaaaaaaaaaaaaaacctttcctaAAGTCTTGTCTTTGacccatatactgtatataaatatgatcAGCAGATAAAGAGAAAACGAAGAATCGTGTATGATTTTCTGCTTTCTTATTGGATTTAGTATATGTATGATGTTTGTGATGCTAAATACCACCACAGCTGGGTGTATGAGATTACTTCCTAATCGCTGTGATTTAGTTCCTTATGATAATGATGTGAATGTTACGTATATAAATCAGTACCTTAAGATACATGTAAGAGATGCGTTGTAGAGTGGTACGTAACGTTCCTTTAGCGGAAGATTTGAGGAGGTCAATTCGGTAAAAATGGAGCTAAACATAATAGAAGTGAAATATCATACCAAGCACTATGATGCACAAATATTATGTACTAAAGATTATGTGTGGTTAATAGGATTAAACTGATTCTGCAATTAATATGATAATGCATTatgttttgtgttctttttttttagcatgctTTCTTTAATATTCCAGAAATTGTGGTTAACGTGGTTAACGTATTCGCAGCCTTCTCAAATCTTCCGTGTGGAAAACATGCTAAATAGTCAGTCAGTATGGTGGATTTAGTTTGGTTTAGCTCATTATTTAACACTTACAAAAAGGGTAAGAATCATAGAACCTACTctctcctttttgtttttttgtttttatttaaaaaaaaaaaaaagaccctacAAACGAATCTCAAACATTTCTTTCCTTCGTCATCATTAACTCGAAGTGCACATTCACCCTGTCGGCTTGTatggttctttttttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243342 True 2308 lncRNA 0.34 1 4549561 4551868

Neighbor

gene id symbol gene type direction distance location
ramp2 ramp2 coding downstream 34924 4498898 ~ 4514637 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding downstream 155032 4359299 ~ 4394529 (-)
ccdc43 ccdc43 coding downstream 315598 4227165 ~ 4233963 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding downstream 335828 4211229 ~ 4213733 (-)
mylk5 LOC108256285 coding downstream 356970 4152059 ~ 4192591 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding upstream 11510 4563378 ~ 4590665 (-)
tubg1 tubg1,LOC107721485 coding upstream 119887 4671755 ~ 4690497 (-)
si:ch211-278a6.1 srcin1 coding upstream 221811 4773679 ~ 4935981 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 400228 4952096 ~ 4965626 (-)
gpatch8 gpatch8 coding upstream 463699 5015567 ~ 5048818 (-)
G205293 NA non-coding downstream 34423 4514936 ~ 4515138 (-)
G205291 NA non-coding downstream 41849 4505198 ~ 4507712 (-)
G205269 NA non-coding downstream 152260 4397073 ~ 4397301 (-)
G205266 NA non-coding downstream 162813 4386528 ~ 4386748 (-)
G205246 NA non-coding downstream 192999 4356316 ~ 4356562 (-)
G205484 NA non-coding upstream 1429 4553297 ~ 4560422 (-)
G205488 NA non-coding upstream 147332 4699200 ~ 4700963 (-)
G205541 fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135 non-coding upstream 214869 4766737 ~ 4770844 (-)
G205558 NA non-coding upstream 276385 4828253 ~ 4828546 (-)
G205628 NA non-coding upstream 505042 5056910 ~ 5057116 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 431918 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 504986 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 683712 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 1135794 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 1471543 3073977 ~ 3078018 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 170549 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 537468 5089336 ~ 5091922 (-)
G206236 NA other upstream 1202899 5754767 ~ 5756733 (-)
G206282 NA other upstream 1289269 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 1388994 5940862 ~ 5950997 (-)

Expression


Co-expression Network