G205541 (fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135)


Basic Information

Item Value
gene id G205541
gene name fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4766737 ~ 4770844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243437
GACATTCATGGCTACTTTGACTTCTGTTACATTGAtctttttaaaaactctttcttcttttttttacaaatacttAACAAAAGTCTCAGTAACTCTATTACATCCAAAAGTAGCATGATATAAAATGGTTCTTACTCAGTCTTATTTATATACATCGCTTTAAAAGTAATACAAGAAAAAAGTGATAAGTAGGAAAGTGTGAGTGCGTGTATGATGTGTCTCTGTTagtgtgtaatttgtgtgtatctgtgtgcacCATATCAGTCGTGTGGGTGTATTTGAAGATTTGTGGTCTGCATGTGTCTTCAGTATCAAATAAGCGTAATACAAATTATAACACTGTTTagatgaacatggaggaaaTTCTAGTTttcatgtgtgaatgtgaataacGGGTGGGTTAATTTTCTTGCCGCTGCGCTGGTCTTCGGCCGTCCGTTCGCCGGTATGGAGAATTTCTCAAGTCTGTGATGATGTCCTCGATGGCTCCATCGGTGACCTGCGGCTTCACCTGCCTCTTCTTCAGCTCTGCTATCAGATCCATCTGAGGCATCTTGGGCATCATGGGACCCTTCTGCGGCGTGGTGTCTTTCTTCTTCGGCGAGGGCACGGGCTGCTCTTCAGCCGCCATCTCCTGCTTCTTCCTCTGCTCGTTCTCCTGCTCTGCTTGCTTGTAGGCTTTAACGAATCT

Function

symbol description
fmnl1a Predicted to enable actin filament binding activity. Predicted to be involved in cell migration; cortical actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; notochord; optic cup; pharynx; and trunk. Orthologous to human FMNL1 (formin like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243437 True 691 lncRNA 0.42 4 4766737 4770844

Neighbor

gene id symbol gene type direction distance location
tubg1 tubg1,LOC107721485 coding downstream 76240 4671755 ~ 4690497 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding downstream 176072 4563378 ~ 4590665 (-)
ramp2 ramp2 coding downstream 252100 4498898 ~ 4514637 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding downstream 372208 4359299 ~ 4394529 (-)
ccdc43 ccdc43 coding downstream 532774 4227165 ~ 4233963 (-)
si:ch211-278a6.1 srcin1 coding upstream 2835 4773679 ~ 4935981 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 181252 4952096 ~ 4965626 (-)
gpatch8 gpatch8 coding upstream 244723 5015567 ~ 5048818 (-)
baxa bax coding upstream 310744 5081588 ~ 5087023 (-)
mpp3a mpp3,LOC107720025 coding upstream 886993 5657837 ~ 5691272 (-)
G205488 NA non-coding downstream 65774 4699200 ~ 4700963 (-)
G205484 NA non-coding downstream 206315 4553297 ~ 4560422 (-)
G205481 NA non-coding downstream 214869 4549561 ~ 4551868 (-)
G205293 NA non-coding downstream 251599 4514936 ~ 4515138 (-)
G205291 NA non-coding downstream 259025 4505198 ~ 4507712 (-)
G205558 NA non-coding upstream 57409 4828253 ~ 4828546 (-)
G205628 NA non-coding upstream 286066 5056910 ~ 5057116 (-)
LOC113528378 NA non-coding upstream 509886 5280730 ~ 5284905 (-)
G206164 NA non-coding upstream 860871 5631715 ~ 5631919 (-)
G206210 NA non-coding upstream 950790 5721634 ~ 5727680 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other downstream 31835 4722417 ~ 4734902 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 649094 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 722162 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 900888 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 1352970 3382831 ~ 3413767 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 318492 5089336 ~ 5091922 (-)
G206236 NA other upstream 983923 5754767 ~ 5756733 (-)
G206282 NA other upstream 1070293 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 1170018 5940862 ~ 5950997 (-)
LOC113528542 NA other upstream 1182889 5953733 ~ 5961050 (-)

Expression


Co-expression Network