G206166


Basic Information

Item Value
gene id G206166
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5657612 ~ 5660848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244082
agggttttcccaggatgccacacacatttatgcaaattgtatttacacatttattgaaATGCTCTTTGACATCAGAGACTGCTGCTTGCACACTATTTTTGTAAGCTTTGATTATTCAGGCATGCCTTTCCAAGAATTTCTAAGAGCCCACTTTGACTGCTAGCCGAGTTTAACACCAGAGAGTTTTAAACTGAGTATGTATACAGGGATCACGAACCTTCAAACcaagctgtaaaatgttttattgcattGAAACCCAACTCAGATGCTACTGTTGAGTGGTTGTGTAGGCATTTTGATCCAACAAGCCACAATCCTTCTGCTCAGAACATGTGTTTAATATGCTGCAGGAAACCCGTGGTTAATACGTTAAAAATACCTGGACATTAATCAACATTAATCAACTGTATAATTCCAGTTACTCAGGTAGTTGgtcaattttaaaaagatgGCTGATGAAGGTGAAACACTTTACATCGCACtactgagtgcaaaagtttacatcccctatGGTTTCTAGGTGGAGAAATTAAACGTTTCAGGCAGTTATGAGGTATTAGAGAACATTTACTATATATCACATTCAGTGtttctcatttgtttaatttgtccactattaataacttaatatacacaatttgaccattttttgttacttgtgataatgTTTTCACAGCTATGAAACCTAACAAACCTAATATCTTCATTTTATCCATGTATAtaggtgtgcaaacttttgcactccacCGTGAGTTAACAATTATCCCTTAGATATTTTGACACATCATATTAAGATGCATCTAcaatacatatttataacatgTATCACATCACTTAAATGGGTACTGAATGTATTTCACTGAAATTGCTCTAAGATGGACAAGAAGAAATGTtgccttttgattttttttttctttttccaaatcaacgTTAAAGGTCAGAGGTTGGAGCTTGTCGGGGTGTTTGGTTGTAACATTTCAGGTTTAGCAGTCACTATAAACGCATTGCTAAATAAGCCGGGGAAATAATATAATCTACATTTAGGTGTGCAGTATGTAATATTTCTGGACACAGTGCATGagtctttaaataaaattccaaaactggttaataaaataatttacatgatTTAAATAAACGCATGTCTATAAACAGAATTCAAAAAGAAGCAGCCATGGTGCATATGTATAATCATTGTCCATACTGTGTATGCATATCGGTGTACAGAagattctcagattttttttttaatgccccAAGACTATTAAACTTTGATGGATCATCACTTTTATTCCTCTCCTTCAGGACGAGTCCGTCTGAGTTCTGGAGTTGTCCGTCTTTCCTCATCGTCCATCGTCCAGACAGACCTCAGTTATGTCCTGTAGTGAAGGAGAGACGTCCAGTGTCCTATTTTGTCCTGCTTTGGGATGATGGATGGTTTTTAGTTCCTGACCCAGCTGACTGGCAGCCAGAAGGCCTCCCTCTCCAGGCGCTCGAGGATGATGCGTAGTTCTGCACAGGCACTCGCAGTGTCCTCCTTAATCAGGACCCGATCCACCAGGTACTGAGCTGACGGCTGGAAAtggaagaatgaaaagaaaaagaaatggctGAAGGAAACGGCGAGGTTAAAGACTCACTGTGAGTCTCCCGTGCTCTCCTGCTGCAGGCGAAGACGCACTGCGACGTCTACGACCCTCAGGGATCCGCGGTTTCACAAAGATGACGTAAGGCTTAAACTCAGCAGTCCTCAGGGTGTGTAATGCCTGCAGCAGCAACAAAAAATAATGGAATAAAAAGTCATTTACACAAATCCAGACGCCTTTAATTAAAGATCAGTGAGGTAGAACAGTGACCAGTCATTAACATTTGTCTAAGATCTGGTTGTGGTGAACAAATACAGGACCTGCCAACCCCTGAGGAGGAATAATGAGTATTCCCGGAAATCACTTGTCTAATAATCCTGGAAGGAACTGTGAAATGCTTCCACACGGCCGACATTTCCACTGTTGATCTGCTCAAACTGTTTGAACATGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244082 True 2040 TUCP 0.39 2 5657612 5660848

Neighbor

gene id symbol gene type direction distance location
asic2 asic2,LOC108411330,LOC107654528,LOC107674665,LOC107720021,LOC107737939 coding upstream 30632 5108421 ~ 5626980 (+)
hrob LOC108259294 coding upstream 553738 5096322 ~ 5103874 (+)
rps11 rps11,LOC107674708 coding upstream 565795 5089263 ~ 5091817 (+)
LOC113528649 NA coding upstream 566280 5091248 ~ 5091332 (+)
LOC113528650 NA coding upstream 566696 5090832 ~ 5090916 (+)
kcnj19a si:dkey-106c17.3,LOC108274233,LOC108432058,LOC107581800,LOC107654469,LOC107737881,LOC107674737 coding downstream 127873 5788721 ~ 5824200 (+)
LOC113528511 NA coding downstream 363448 6024296 ~ 6025839 (+)
zgc:100868 NA coding downstream 458645 6119493 ~ 6128811 (+)
cln3 cln3 coding downstream 477252 6138100 ~ 6147618 (+)
gdpd3a LOC108256211,LOC103040887,LOC108411042 coding downstream 519951 6180799 ~ 6188261 (+)
G206157 NA non-coding upstream 27953 5629458 ~ 5629659 (+)
G205454 NA non-coding upstream 576408 5079987 ~ 5081204 (+)
G205436 NA non-coding upstream 659816 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding upstream 731930 4923914 ~ 4925682 (+)
G205315 NA non-coding upstream 984583 4671760 ~ 4673029 (+)
G206212 NA non-coding downstream 74522 5735370 ~ 5735607 (+)
G206221 NA non-coding downstream 94004 5754852 ~ 5756939 (+)
LOC117599005 NA non-coding downstream 208014 5868862 ~ 5869806 (+)
G206289 NA non-coding downstream 257597 5918445 ~ 5925185 (+)
G206291 NA non-coding downstream 276400 5937248 ~ 5964081 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 643096 5003548 ~ 5014516 (+)
psmc3ip psmc3ip other upstream 936144 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 946296 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 986966 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 1671328 3966733 ~ 3986284 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 228704 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 469932 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 499486 6160334 ~ 6175366 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other downstream 519248 6180096 ~ 6194964 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other downstream 591496 6252344 ~ 6260857 (+)

Expression


Co-expression Network