G206210


Basic Information

Item Value
gene id G206210
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5721634 ~ 5727680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244141
TCAATTGTACAAatctaaaaatcacatgaaaaaaaataaaataaaaacatgtacaccacatgtgaaaaatgtatgaaaCTGTATGTGTAAAATTCACATGTGAATCATGTTATTATTCCTATGTGAGTGTCATGTGACTGTTCTGCAAGGGTTTGGAGCACATTTGGATGTAAACGAAATGGTTTGTTTAGTGAAACATCTCTTAGTGAACATGATTCAGATTCCTGTTGGATACTGAGTGACATGCTACACTGTAGTACCGAAGAATgcagtatttataaaatgttattaggATTTTGCTTGAACTTCTGCATAATCTCTAAATATCCTGCTTGGTGCTTAGTCCTGCCTGAGTCACAGTGTCACCCTCAAGGCACTGAGATGCTCAGTGAGGTGCTGGTGTGTGACTCACTGCTCTGTTGATGAAACTCTCCTGTTTGTTTCGGATTCTCAGAAATTCGCCGGCGTAAACTTTGATGTCGCAGCTCTGCTACACCTGCGTGTTGCCCTTGGCAAAGTCTATCTGGGTAACTGTATGACAAAACAGCAGTGTCACGAGCAGATTAGTTGTTTGTTCAGGATATAATGAACTGGTTATTGTTATTTCAGCTAAAGTAGATGATCAGTCCTTGATCTGTTCTGGTTAAGCAGATTTCAGTGAAGCAGTGGAGCCAAAAATGTCGACATTTACACATGTAGACAGTTTTCCACTCAATGTAGATGACTAAGCAAGACTTGTTTGGTGTCTGGGGTTTGCTTGTTTCGCTGAACGTTTGTAATTAGTAATAAATCACAGATGGGAGTGTGTTCACGATGTATGCAATGTCATGACACCAAATGACCACAAATCTACATACATGACCATAACATATAGTttgaagaaaaagcacaaaacctcttttccaacaggaaatatataaatataatgtcatACGGATATAACGTTATATGACACGTCAGTTTGGACAGCATGCAGTATATCacctggggttatttctacAGGTTATTTTATTGAACATAATATATGCTGTAATCTTTCCAGACGCATGCATGCTAAGTCTAtaaaaaatactgacataacAGATTAGGACAAGACTAAAATGTCAGACATGACATTACTCACCTCCCTATTTAAAACTAATCCAATTCGAATAGGACTCATGTTACCTAAAAGTGGGTCAAGTTCCCTTTTTTgtcaaactgttcctttaatagaTACGACCTGCTTTATTTATCAGGCGTGACACGTATAtcttcaggtgtgtgtttgtgtatatatacacagctGTCATTTGAGTTGACTGTTCCAAAGGCAATTTTGACATTGAGACACCCTCTTCCAGGAAATGAGGACTTCTCAGACAGAACAGTGACCCAGTCAGGGCAGGTTACTGTGCCACATGTTGGTCTTACCTGCCTCAGGGGGTGATTTTGCTTctaataaagtgtgtataagGGGTGGGTATGAGGGTAAGAGGGAAAAGCAGTCATAAACTTGAAAGCAAGAATAAAAGAACAGCCTTGAGGCTGAAATCTGCCTGTGTCTGGCACCACGTATACCTCCTGGAGAGGAGAGGATAGGAGGAGAGCCATAGACAGAGGAGTGAGGGATGAGAGGAGAGTCTCGGGGGGTTAAAAAGGAGTAAGTGTGAGATAGTGTGAGAcattgagagtgagagagaagacaCAGAGATATGATTGTGAGCAAGACAGGAGGTATGCGAAGGAGGAGTGAGGGAACAAATGGAAACTGGAGAGATCATGGGAAACaatattacatcatttttgTTAGCCAAAGTGTCTTATTTGCTGATAATGGAGAATGGGGATGTGTGATATAGAAGGAAGCATTAACACCATGACTACtggactcactcactcatttgcTCAATTCCACAATTCAGCTTTTTCTTTAGATCAGTTTGTTTTGtggtcagaaaaaaatgcaacataCAGCTATGTTGTTTGTCTTAATACAAAAAAGATTACTTGTTCCTGATGAACAACATGCATTTGTATTGTCCATTTAGTgccttaaatacattttatggaAAGTTTTATCATCCACAACAGAAACGAGACCTTTGTGCCGGAGAACTTTGATGAACTGGCGTCCCATCGAGAGTGTATTCTCGCCTCATGCCCGGTATTCCCAAGAatccttgaccaggataaagtgcttgatgatgatgaatgaatgaatgttatcaGAGAAAATGGTTTACTGGTCAAAATCTGCATAATACTGACAAATTATTAACTGGTAGCTAACAATCATAATATAtcatttttctaataaaaatgcataacttGTAGAGGTTAAAACAGCTTTTGTGAACCAACAAATCACATCCGACTAAATTCCTGACCAATCAAGGAACGTCAGAGTGTACAAACAGTTTGGTGTACTCGAAACCAAGTGACGTGaccaaattaaaccaaattaaaatcaaatgtaaataaaggaTTCAACGTCATAAAAGTCAAACTCCAGAGCAGCAAATAAACTGAACATGAAAACTGTCTCAGGCTCAGAGGAGACGAGGGAGTGCACACTTGAGCCAGAGTGCGTGaggctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctaagaggattgttgtgtgtgtgttggagtgcaCAGTAATCTAAAGATGGTGGGTTAACGCTAATCTGTGTGCCTGTAGGTTAATAATGCTTTGTTTCAGTAAAGCTCTTTCCATCCACTGcctttttctttcactcacGTATAAATATCAATCGAAACTGGCAATTAATCAATCTGAGTTTGTTTAGTCTGAgtttcttttctccctcttagtgattcagtgtttattaataaGGCGTATTGCCGGTGTATTTGTTCATCACTTGTTTCTTGTCCTcaattccctctctctctctcattctcttagAGTCACTCCCTTTCTCGCTCCCTTTTCTGTTCTATTGGATTACTGACCATAAATCCGCCTCCCTAATTGGTAGCCATGTGCTAGCCATTCTTTAATAGGATatgacagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcttccgGGTCCCACTGAACAAGTGCTCTTCCTGGGGGCCATCTGGTAGAGGAAATATGAAGGAAGTAGGGAGAGATATTACGATGAACTGAGGGAGGAGGAGATATAAATAGCTATTAGACATGATAATTCAGCTCATttagaaaacaggaaacagagcTTTCTTTCATATGTTGTATTAAAATCTTATATTCTGTTCAACACATCTCTGAAACAATATCAAAATCCTTGTCAGAGTAATGTAGACAAAATAATATAGACCATATAATCTGGAAATACAATTATAACCTCAATAAACAGTAGGAAATTGTGGCAATCGTAAGTCTAAAGCACCTTGTCGAATGATATTCACTTATGATTGATACACTTATGATCTATATATCAGATGGATAAAAAGAGAAATTTGGGGCTTTGATACTACCCGTATGAACTCCCAGGACCTGTCAGTGAGTCCATATTCCTCATTTTCATTACTGCTATTCGTTTCGCTATAATTACTAAAAAATAAGCTTGAcgaatatatttacattaaggGTGTAACACACTGCCACAGTCTGtaattgtatctgtatttgtttagtactccaaatatttgtatttgtattcatattcagtttcaACTGGTAATGGGCGTGGCCTAGACCGGAGATTGTCTTGGAATTGACactgaaaaatactgaaaaaaaaacaagactgttggaaaaaaaagaataattttcaTTTGCGaattataacaacaaacagcaatttgcagaacataactttattcacCTCCTGAACCAGACACACTGTGGAACTTTCTCGAAAACGTTCTATCTAATGTGAGTCAGTAAGCAAACTTACTATGTTTCTAAACAGCAGTGCGTTTCCAAGATCTTGGAACTGTTGTTTGACAATAATAGCCATCTTCGACAGATTTACTTTAGGTCTTGGCTTTACTTTCTAGAAggatcagaaaagttcactggtGCTGCTATGAGTCAACTTGGGGTCCTTTAAgtggcatttcattataatgcctaTATGAATTTCtgggaagattttcttttaataatggtAGAGAATGATTATCtaagaatgacaaaaaacacacagtaaatgcacaatttaatattgttaaaatgaattaaatggtTACTTTTTGGAGACTCCAGCAGAGATATGCTGCCTTGTGAACAGCacatggtctgtgtgtgtggtgatacAGAACTATGGTAGATATGCTTTAGCTCAGTAAATCAGTGTTTATGTCAGGCTACTAAAGCAAACTACTgcataaaaaaagcaaatagtGCATCACCTACTCATAACATGTGAATGAACATGGTCTTATTAACACCACCTTGAACTTGTTTTGGAACAAAGTTGCTGGTGAACAAAGTTGCAAATCCTATTTCCGTAAACTTGGCTATgacaaacaaagggaaagtgtaagtacAGACAGTGTAACTACAATATCCAGAACACTTTCTGTTTTCAGATATATTGCAAACACTGGAAGAGGGAAAAGGTGTTTATGTGGTGgataatgtcagtgttttatagATGCTGCGAATCAGAAATGCCTCAGGTTTTTCTGTATGGTTTTAAGATGAAATTATGGTGGGGATTTTGCAGAGACCTGGCAACCGTGTCCACCCGATTCATAATTGTGTCCTTCAAGCTctgcattaaagtaaaaactgcGGGGTCTTAAATCTGATGCACAGCTTTCCGGcagaaaaaacacataaaaaaacgAATAGTGTGCTACGTATTTTCATGTGTATTTGCATTCGTTTAGAACATTAACCATAACagtatctgttcaatctgaacaGCGTAttcgtatttggttacatccgtAGTTTACGTGCAATTAAAGAAACTGTAAAATCTAGAGTATGACACTGATATGTATTATTCTTAGCCTGCTTAGTTTGTCCCTGTTGCATCTGCTTAACATTATTTTGCGTAAAAATACCCTTAAATGCTTATGGTTCCTTTCATTCTGTTTATTGGGGTCAAACTGCCTAGAGCTTGGGTTAAAGGTGTCAAACCTGGGCATCCTGGCTGTAATGAAAGTCAGAGAAAACACCCATGTCCCCTCCTTGACCAACAGTCCAAAGTCCAGagcaggatgatgatgatgtcatcggGCTATGATAGGCCCTGCAGCCATGGGCTTTCATTCCTGGTTGTCTCTTAACTGATAACTTGGGATATACAGCATCATGTAACAATATGAACTAGATGTGTTGGGGATACTAACTTTATGCTGCTCACTTGCCCAACTCTAGATCAGACGTGTACGGGAGGACTGCTGTGTGCTGCAAAATGTCGAAAAGCAGCACCGAGTCTTGTAGACACAACTCATCACTTTCCTCATCACTTATTGAAAACGTAGTCTGTTAGCTTCACTGtatcaatgattataaaaaTTATGTCTGAGAgtttgccatacaagtccctgtgaacgagttgttactgtagaaacaatatcATATTAGAACAAAAGCATTAAAAGTAATGTGTGATTTATCTTGCAGCTGAAGTCCtctcagagatgctgttatagaaaataaatcaacaccttctgacaaatcaaatttgagaatgcccctgtgctgtggtgtaagagcaCATTATTGTATCACAACCTTACGTTCCATGCTTGTGGGGGCTGAGATGAGGTGGGTGTGATTCTGCCAGGAAAGAATGAAGCAGAGATAGCATTTGGGTGCAAGAGAGTCGGATGAAAAGGCAGGCCTGTCAGAGGTGGGAGTGAAAGCTGTTCATGACCATCAGATACCTGCACTGGCGTCAGACTCTCTCCTTTGATGTCGCGGCCCTTGAGTGCAGAAAGCAACACCCTCAGGGCTCCTCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244141 True 5936 lncRNA 0.39 3 5721634 5727680

Neighbor

gene id symbol gene type direction distance location
mpp3a mpp3,LOC107720025 coding downstream 30362 5657837 ~ 5691272 (-)
baxa bax coding downstream 634611 5081588 ~ 5087023 (-)
gpatch8 gpatch8 coding downstream 672816 5015567 ~ 5048818 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding downstream 756008 4952096 ~ 4965626 (-)
si:ch211-278a6.1 srcin1 coding downstream 785653 4773679 ~ 4935981 (-)
znf281a LOC108260862 coding upstream 29464 5757144 ~ 5777225 (-)
svilc LOC108281065 coding upstream 169880 5897560 ~ 5931876 (-)
cdk21 LOC108274791 coding upstream 206360 5934040 ~ 5938431 (-)
nmt1a nmt1,LOC108432052,LOC102778525 coding upstream 235008 5962688 ~ 5978373 (-)
plcd3a plcd3,plcd3a,LOC108432051,LOC107581738,LOC107654535,LOC107591554 coding upstream 253520 5981200 ~ 6017987 (-)
G206164 NA non-coding downstream 89715 5631715 ~ 5631919 (-)
LOC113528378 NA non-coding downstream 436729 5280730 ~ 5284905 (-)
G205628 NA non-coding downstream 664518 5056910 ~ 5057116 (-)
G205558 NA non-coding downstream 893088 4828253 ~ 4828546 (-)
G205541 fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135 non-coding downstream 950790 4766737 ~ 4770844 (-)
LOC113528476 NA non-coding upstream 225118 5952798 ~ 5953504 (-)
LOC113527891 NA non-coding upstream 459794 6187474 ~ 6189926 (-)
G206628 NA non-coding upstream 475632 6203312 ~ 6204196 (-)
G206649 NA non-coding upstream 546136 6273816 ~ 6346363 (-)
G206924 NA non-coding upstream 1097216 6824896 ~ 6825760 (-)
G205633 rps11,LOC102786880,LOC107674708 other downstream 629712 5089336 ~ 5091922 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other downstream 986732 4722417 ~ 4734902 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 1603991 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 1677059 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 1855785 3768855 ~ 3865849 (-)
G206236 NA other upstream 27087 5754767 ~ 5756733 (-)
G206282 NA other upstream 113457 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 213182 5940862 ~ 5950997 (-)
LOC113528542 NA other upstream 226053 5953733 ~ 5961050 (-)
G206604 NA other upstream 399230 6126910 ~ 6194996 (-)

Expression


Co-expression Network