G206221


Basic Information

Item Value
gene id G206221
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5754852 ~ 5756939 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244156
CGTGAGCTACAAATTTTGGTGTGGTGACAAAACgggcaggggaaaaaaaaaaacacaacaaaaggtAGAAACATCTTAGTGTTCTTGTACGTTGTATGTAAACAATAAGAATACATCATTTTGGTTTGGTGATAAGAGAAAGAACTCACATTGAAGAGAACGTGCGATTCTTTTTAGCATAAAATGAACACTATGGGTGTTTACCAGTCTGAATGAGAGGCCAAAACTTTCCCTGCATTTATAACAAAGGCTTTTGGCTAAAATGTGGACAAATTTAATTCAATCTGTAACTGTAAATCATGCATAAGCAAGCCGATGTGTCTGTGAATGTTTTCAGTCATCCAGGTCATAGGTGACTGGACTTATACTTTTCAATTTCAAGACCAGAACTGATAAATTTCCAAAGATAACCAGCAAAATGTTGTGAAGATTAAAGTACAAGTCCAGCCAGCAAAACTTCACCAAAAGACTACAAATTTGGTTTTCCATCACATACTTTAAGGTGAACAGATTTTTACTTGATGCACCATCATTTACACACCATTTCCTCTCTTTACTGATACACCACATTTCCACCTGAGACAAACATAAAAGGTATTTTTGGAAACTcacaaaatacaaatttaagattagtgtaaaaaaaaagtggaccaAATCTCCACTATTGTTAAAAGAGCAGAGAAAAAGCTGCTCCAGTCTCAGTGCCATAGTtcaaggaaaactccaccctgaaacacattaaacatgctTACAGTGAAATATGTGTGATGTCTTTACGGATTCTGTTGCTAATCTGTtggctggtgctgtattttctctATTCCTGTGAGAGGTTAGTGGTTGTGTGTAGCACTGTCATCACAGGTAGACATTtctagcgcagttacaatggGGTTTAATAGTAGGAAAAAAATTTCACAGATCTCAAACATAATGGATAATGGTCAGAGTTTGCTGTTAgctccaaaaaaataaaagagcaagagcttcttttctcattcaccATTTTCCATCAACGCTCAGTgtcataataaaaagaaatccaGTGCAGAAGCAAACGCTGgccccagaatgcaatgcagctatacatcATGCAGTTGGTTAGTGACCTACAAGATGACAAGGGGTACTGCACTGATGACAGTGTAAGCATGAAAGCGTGTGCAGGTACAGACTAAAGGTCTAAaactctgctgcatcactctctttagggaGAGATGATGAGCTAAATCCTACTGCAACACTATCGGCAGGTAgtcgaacggcattgtgggtaatgtaggaaaccgttaaccaaagtgaacAAAGTTTAAACCAAAAGCTTCAACCTAGAATCTCGTTGTAAAAAAATCTTGGACATTAATgaagattatttattaattataaatgtcgatatgcaagttgttcagggtggattttttctATAAGTCCAAATCCACTTCAAGACTCGAGAGGTCATGCTCTCTAGAAGGCCGTCTCTAGACAGACTGAGTAAACCCtacaaaaactgaacaaaaaaggaaagaaaaggtgAGGATTTTCTCTACTAAAGCCAAATCGTCCCTGCTACATGCATGCCTCGTTCTGTCCTGTATCCCTGCTTGTGTCATCAGTGATATGAGGTATAAAGCGATCAGCTATGAGGATCATTATTGATAACAGCCATACGAGTACCCTAGGTTGCTACAAACACAGTACTTGGTTCTAGTGGTCACTTTTTGTTCCCCGTGATATCCGCCTCCAGAGGGTTCAGTCTGAAGAAATCAGTAGGTGCATATGAAAGAGCTATACTGaggaaaaaagcacaaaaggaCCGATTTAAAAACAGAGACAGCAGCCAACAGCAGTGGCGGAAGACAATGCActtacttattaaaaaaaaaaaaaaacaacaacaaacaataatacttaattaaattattcagtacaaaacaaaaagatgaaATGTAGTTGAAGATAATACTTCACCCTGCATGCTCACACAGTTTCAGCACTGTGAAATGGTTACGTTTTGTACGCTTTTATGGATCACCTGCCCTGTGAAAATCACAGCGTCTTTAAGAGGGGCCGTTTAGACTCGACAGATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244156 True 2088 lncRNA 0.38 1 5754852 5756939

Neighbor

gene id symbol gene type direction distance location
asic2 asic2,LOC108411330,LOC107654528,LOC107674665,LOC107720021,LOC107737939 coding upstream 127872 5108421 ~ 5626980 (+)
hrob LOC108259294 coding upstream 650978 5096322 ~ 5103874 (+)
LOC113528649 NA coding upstream 663520 5091248 ~ 5091332 (+)
LOC113528650 NA coding upstream 663936 5090832 ~ 5090916 (+)
LOC113528648 NA coding upstream 664248 5090520 ~ 5090604 (+)
kcnj19a si:dkey-106c17.3,LOC108274233,LOC108432058,LOC107581800,LOC107654469,LOC107737881,LOC107674737 coding downstream 31782 5788721 ~ 5824200 (+)
LOC113528511 NA coding downstream 267357 6024296 ~ 6025839 (+)
zgc:100868 NA coding downstream 362554 6119493 ~ 6128811 (+)
cln3 cln3 coding downstream 381161 6138100 ~ 6147618 (+)
gdpd3a LOC108256211,LOC103040887,LOC108411042 coding downstream 423860 6180799 ~ 6188261 (+)
G206212 NA non-coding upstream 19245 5735370 ~ 5735607 (+)
G206157 NA non-coding upstream 125193 5629458 ~ 5629659 (+)
G205454 NA non-coding upstream 673648 5079987 ~ 5081204 (+)
G205436 NA non-coding upstream 757056 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding upstream 829170 4923914 ~ 4925682 (+)
LOC117599005 NA non-coding downstream 111923 5868862 ~ 5869806 (+)
G206289 NA non-coding downstream 161506 5918445 ~ 5925185 (+)
G206291 NA non-coding downstream 180309 5937248 ~ 5964081 (+)
G206301 LOC108257121 non-coding downstream 183940 5940879 ~ 5944432 (+)
G206339 plcd3,plcd3a,LOC108432051,LOC107674588,LOC107581738 non-coding downstream 233668 5990607 ~ 5992072 (+)
G206166 NA other upstream 94004 5657612 ~ 5660848 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 740336 5003548 ~ 5014516 (+)
psmc3ip psmc3ip other upstream 1033384 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 1043536 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 1084206 4620218 ~ 4670646 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 132613 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 373841 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 403395 6160334 ~ 6175366 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other downstream 423157 6180096 ~ 6194964 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other downstream 495405 6252344 ~ 6260857 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location