tmem98 (tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031)


Basic Information

Item Value
gene id tmem98
gene name tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5889552 ~ 5898200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244231
GTgaagtttggattaaaaaatgattgaGTCTTCCTTTATAACCTTTATATTCTAGTATATCCACTGTCTCAGTTAGTTGCTGTTTCTCTGCAGACTTTCACCTTTTTcaatttactgttttatttctttcatttgtaaTCCAATATGTACAGTCAAATTAAAGTTTCATAGAGAATATTTTTTCATTCCAGTTTATTTGTGTTCTTATAGCTGATAAGAGATACCAGATTTAATTCCACGGCAGTAAAAcaactaatgtttttttttattcacattttccccccagGCCTGGAATAAAGGGTTAGTGATGAGAAAAGATGGGAAAAAGTGTAGAAAGGGaaaggaaggagaaagaaaacaaaacagctttgGCTGATAAGAGAGAGGAAATCGAAAGCCATTGAGTGAGTGTAGGCAGGCAGTCCTCCTCagccccctggacttttggctAAAATCAGTGGATGAATTTCTGTAAGGCACTAAAGTGACcacactcaaaacacacacacacacactctctctctcttacataATCATTAGGTTTTAAACTGTACATGAAAAAGGGGGTGACATTACAAGAAAATAGGATTATTTCAAAAACAAGGActacaaaaaaaagtcttctgCTTAACATAGAAATTTAAACTGCTTCAGTAGTTCTGGGTCAGTAGTCTTTCAAATGCAGCTTCAGTACAGGCCTTTGCTCTTTTTCAGGTTTAACTGCTGCAGCTCTGGCAAGGAATTGTAGTCTTTCCTCTTCATTCCTAAAACCACCT
>XM_026916323.2
TCCTCCATCGCGCGCGCTCTCATTCCGGAGCTCTCCGTGCTGTCTCCAGCCGCGCGCGCGCACCAACCAGCCGCTTTGTTTTCGCCAGAAAAACGCCTCAAAATGGAGGAGCACAGATGAACCCCAGACATCTGGTTAAAGCCTCTGATCACACCCCCTGCATCGGACACATCACGATGGAGACAGTGGTTATTGTGGCCATCGGAGTGTTGGCCACCATTTTCCTGGCATCGTTCGTGGCACTGGTGGTTGTGTGTCGTCATCGATACTGCCATCGGCCCAACCTGTTGCATCACTTCGAGTCCAAGCCCACAGTGGATCTGATTGGAGCGATGGAGACTCAGAGCGAGCCATCCGAGTTGGAGCTGGACGACGTGGTCATCACCAACCCACACATCGAAGCCATCCTAGAGAATGAGGAGTGGATCGAAGACGCCTCTGGCCTAGTGTCTCATTGTATCTCCATCCTGAAGATATGCCACACTCTGACAGAGAAACTTGTTGCCATGACGATGGGCTCTGGAGCAAAGGTAAAAGCCCCTGCCAGCcttagtgacatcatcacggTGGCCAAACGCATCAGCCCCAGGGTAGATGATGTGGTTCGGTCGATGTATCCCCCACTGGACCCAATCCTCCTCGATGCCAGGGCTACAGCATTGCTGCTGTCCGTCAGTCACTTAGTGCTGGTTACGCGGAACGCCTGTCACATGTCTGGCAGCCTGGACTGGATCGACCAATCACTGCATGCAGCTGAGGATCACATGGTAGTGCTCAGGGAGGCAGCCTTGGCGTCAGAACCAGAGAGACGACTACCAGAAAGAGAGCAGTCCATCTGagtcacaaatacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaagtaGGGTACTGTGAcacagaaaatgtcaaatgCAATCCACACATATACTTAGCAATAGCTTTTCTTGCACAAACACCTTACCTTCTTGTTTTAATCgtcttttttaatctgttacaTTGCTTGCAGCGATAGTTACAATCACTTTCTACTTTTTCACTATTAGTGTAAATGAGTTAAAACAATCAGGGGCACTTATACTATTCTTATCCACCTCTTTTTTTATAGCATGGTAGTTTAAACCTCCTAAACTGTATTCATATATGGATCTGTTGTTCTGGTTGTCTATATTATTGCAGCTGGTAGGCACAATAAGTACACAAACATATCAAAATTCATGTTCTTGCCTCAAATCAGCTAAATGTTTGTATATAGTGAACAAGAaacatacatatttaatatgcaCAGTATTCACAAGTGTTTAGTTATATAGTCATGTATAAAATGTGGAGTTAGTTTAGAAAGGAAGCACTAGTGTGTATCATTATATTCTCAGATTGTggagcaaaattaaaaattcatgtTCAGATACAAAGATCCCAGATTCTACTAATCATaaactcagaaacacacacactccatttttGTGGCCTGTAATCCTAAATCACATGATGTTTAAAGCCTTTCTAATTTCCAGACCTCACCACACTGCTTACACACCTAACAAATGCCAATACAACCAGCTTAAACATTAACAAAAGTCTTAACCATTGCCAGCCTAACACTGAGCACATGCTATCATAATATTGCTATTACAGTGGCCATGAAATCAAAACTGGTGTTTTAGAGCTTTTTATATGCCCTTGTGGAGAAAATATGATGCACTGTCTTTTGtaaatattcttattttaattttacagtttctAATTTCTAGGAAAGCAGTGAAAATGTTTTGATGAATCATCCTGTAGTTGTCAGATTTGGATCTAATCAAACTCTTTCTAGAAATTATGaattaaacaatgttttttccTTACCAAAGTCACcagcatattttaaaataaatgggaAACTACAGATGTgaagtttggattaaaaaatgattgaGTCTTCCTTTATAACCTTTATATTCTAGTATATCCACTGTCTCAGTTAGTTGCTGTTTCTCTGCAGACTTTCACCTTTTTcaatttactgttttatttctttcatttgtaaTCCAATATGTACAGTCAAATTAAAGTTTCATAGAGAA
>XM_026916324.2
TCTCCGTGCTGTCTCCAGCCGCGCGCGCGCACCAACCAGCCGCTTTGTTTTCGCCAGAAAAACGCCTCAAAATGGAGGAGCACAGAGGCAGAAAGAACAGAGAGGCAGATGAACCCCAGACATCTGGTTAAAGCCTCTGATCACACCCCCTGCATCGGACACATCACGATGGAGACAGTGGTTATTGTGGCCATCGGAGTGTTGGCCACCATTTTCCTGGCATCGTTCGTGGCACTGGTGGTTGTGTGTCGTCATCGATACTGCCATCGGCCCAACCTGTTGCATCACTTCGAGTCCAAGCCCACAGTGGATCTGATTGGAGCGATGGAGACTCAGAGCGAGCCATCCGAGTTGGAGCTGGACGACGTGGTCATCACCAACCCACACATCGAAGCCATCCTAGAGAATGAGGAGTGGATCGAAGACGCCTCTGGCCTAGTGTCTCATTGTATCTCCATCCTGAAGATATGCCACACTCTGACAGAGAAACTTGTTGCCATGACGATGGGCTCTGGAGCAAAGGTAAAAGCCCCTGCCAGCcttagtgacatcatcacggTGGCCAAACGCATCAGCCCCAGGGTAGATGATGTGGTTCGGTCGATGTATCCCCCACTGGACCCAATCCTCCTCGATGCCAGGGCTACAGCATTGCTGCTGTCCGTCAGTCACTTAGTGCTGGTTACGCGGAACGCCTGTCACATGTCTGGCAGCCTGGACTGGATCGACCAATCACTGCATGCAGCTGAGGATCACATGGTAGTGCTCAGGGAGGCAGCCTTGGCGTCAGAACCAGAGAGACGACTACCAGAAAGAGAGCAGTCCATCTGagtcacaaatacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaagtaGGGTACTGTGAcacagaaaatgtcaaatgCAATCCACACATATACTTAGCAATAGCTTTTCTTGCACAAACACCTTACCTTCTTGTTTTAATCgtcttttttaatctgttacaTTGCTTGCAGCGATAGTTACAATCACTTTCTACTTTTTCACTATTAGTGTAAATGAGTTAAAACAATCAGGGGCACTTATACTATTCTTATCCACCTCTTTTTTTATAGCATGGTAGTTTAAACCTCCTAAACTGTATTCATATATGGATCTGTTGTTCTGGTTGTCTATATTATTGCAGCTGGTAGGCACAATAAGTACACAAACATATCAAAATTCATGTTCTTGCCTCAAATCAGCTAAATGTTTGTATATAGTGAACAAGAaacatacatatttaatatgcaCAGTATTCACAAGTGTTTAGTTATATAGTCATGTATAAAATGTGGAGTTAGTTTAGAAAGGAAGCACTAGTGTGTATCATTATATTCTCAGATTGTggagcaaaattaaaaattcatgtTCAGATACAAAGATCCCAGATTCTACTAATCATaaactcagaaacacacacactccatttttGTGGCCTGTAATCCTAAATCACATGATGTTTAAAGCCTTTCTAATTTCCAGACCTCACCACACTGCTTACACACCTAACAAATGCCAATACAACCAGCTTAAACATTAACAAAAGTCTTAACCATTGCCAGCCTAACACTGAGCACATGCTATCATAATATTGCTATTACAGTGGCCATGAAATCAAAACTGGTGTTTTAGAGCTTTTTATATGCCCTTGTGGAGAAAATATGATGCACTGTCTTTTGtaaatattcttattttaattttacagtttctAATTTCTAGGAAAGCAGTGAAAATGTTTTGATGAATCATCCTGTAGTTGTCAGATTTGGATCTAATCAAACTCTTTCTAGAAATTATGaattaaacaatgttttttccTTACCAAAGTCACcagcatattttaaaataaatgggaAACTACAGATGTgaagtttggattaaaaaatgattgaGTCTTCCTTTATAACCTTTATATTCTAGTATATCCACTGTCTCAGTTAGTTGCTGTTTCTCTGCAGACTTTCACCTTTTTcaatttactgttttatttctttcatttgtaaTCCAATATGTACAGTCAAATTAAAGTTTCATAGAGAA

Function

symbol description
tmem98 Predicted to be located in endoplasmic reticulum membrane; extracellular region; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in nanophthalmos. Orthologous to human TMEM98 (transmembrane protein 98).

NR:

description
PREDICTED: transmembrane protein 98

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU244231 False 776 lncRNA 0.36 2 5897385 5898200
XM_026916323.2 True 2099 mRNA 0.42 7 5889552 5897559
XM_026916324.2 False 2091 mRNA 0.42 8 5889583 5897559

Neighbor

gene id symbol gene type direction distance location
kcnj19a si:dkey-106c17.3,LOC108274233,LOC108432058,LOC107581800,LOC107654469,LOC107737881,LOC107674737 coding upstream 65352 5788721 ~ 5824200 (+)
asic2 asic2,LOC108411330,LOC107654528,LOC107674665,LOC107720021,LOC107737939 coding upstream 262572 5108421 ~ 5626980 (+)
hrob LOC108259294 coding upstream 785678 5096322 ~ 5103874 (+)
LOC113528649 NA coding upstream 798220 5091248 ~ 5091332 (+)
LOC113528650 NA coding upstream 798636 5090832 ~ 5090916 (+)
LOC113528511 NA coding downstream 126096 6024296 ~ 6025839 (+)
zgc:100868 NA coding downstream 221293 6119493 ~ 6128811 (+)
cln3 cln3 coding downstream 239900 6138100 ~ 6147618 (+)
gdpd3a LOC108256211,LOC103040887,LOC108411042 coding downstream 282599 6180799 ~ 6188261 (+)
LOC113527922 si:ch211-11k18.4,ehd3,LOC108260452,LOC108411040,LOC103375184 coding downstream 299440 6197640 ~ 6204209 (+)
LOC117599005 NA non-coding upstream 19746 5868862 ~ 5869806 (+)
G206221 NA non-coding upstream 132613 5754852 ~ 5756939 (+)
G206212 NA non-coding upstream 153945 5735370 ~ 5735607 (+)
G206157 NA non-coding upstream 259893 5629458 ~ 5629659 (+)
G205454 NA non-coding upstream 808348 5079987 ~ 5081204 (+)
G206289 NA non-coding downstream 20245 5918445 ~ 5925185 (+)
G206291 NA non-coding downstream 39048 5937248 ~ 5964081 (+)
G206301 LOC108257121 non-coding downstream 42679 5940879 ~ 5944432 (+)
G206339 plcd3,plcd3a,LOC108432051,LOC107674588,LOC107581738 non-coding downstream 92407 5990607 ~ 5992072 (+)
G206540 NA non-coding downstream 585479 6483679 ~ 6509229 (+)
G206166 NA other upstream 228704 5657612 ~ 5660848 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 875036 5003548 ~ 5014516 (+)
psmc3ip psmc3ip other upstream 1168084 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 1178236 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 1218906 4620218 ~ 4670646 (+)
si:ch211-198p11.6 LOC108276725 other downstream 232580 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 262134 6160334 ~ 6175366 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other downstream 281896 6180096 ~ 6194964 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other downstream 354144 6252344 ~ 6260857 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other downstream 1186241 7084441 ~ 7102215 (+)

Expression


Co-expression Network