si:ch211-198p11.6 (LOC108276725)


Basic Information

Item Value
gene id si:ch211-198p11.6
gene name LOC108276725
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6130780 ~ 6134572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244359
TTTTCCAGTCAGCATGAAAAcaacgaagaagaagaaaagcaaaaaaaaaagctcgcTACCTGGTTGCCAGGACAACGCCGATGACCCGCGTTGTTACGTTTCGTGAGAATTGATTTTATGGaaagttgattttatttattgtatcgTTTTATCCACGATAGTAAAACGCCGAGATGATGTCGTTAGCAAGTTAATGCGATGATTATAAGACGGTGGAATACACGAGTGTGATGATGACGGCTGTCCCTTTATGGGCTCTCTCCCTTCCACTCCCTGCCATCATCCTGATCTCCGTTGGACTCTATATGCTGTTTCTTGCGGGTGTCTTATGGTGCCATCACTGTCTCAAGACCCAGTGCAGTCCTCAGTGTACAAACTGCTGCCCGAGTGTATCTCCTTTCGAGTACTGTCACATGTGCGCTCAGTCATGTGACTGTCACCCACCATCTCTTCACACGTGCCTTGACCACTCCTGCCCCACTTCTAATTGTGCCATGTGGGACTGCGCCTGCACCCCTCAGCCTCCTCAGTGTGACTCCATCAACTGCTTATGCTGCGAGATCAAGTTCAAATAGAGACAAAATGGAGGATTTGTACTTCCAAGTACAGAAGGTTTCCGTGTAGACTGAGCCGTGAATGTGGTCATGTGTTCAGAAGTGCTTTTGTGCTTATGTTTACAGCGAGTATGTGCTTCTTTTCTCCATTCGCTGCACATTTCGTTAAACACATCCTTTttttagaatgtctttgtgttttatgtttactGACGTCACATGCTTTTTCAGAGCTAGCATTCAAGTTCTTGCTTTCTGATGAGCTTTAACCTAGCTAGgccattttttcagtgtttactaACAGCAGGTGTGATATATTACTTGTGCTAAAGTTCCCAACATTTATACCAGCATTAAAAATTTACAAACAGAATCATGGCCTTTTCCATATCCAGGCTTTTTAATTTGACCATGTGATTGAGAGTTGTGATAGTTTTCACTGAAGAGAAATGTTATACACTTATTCAGATATGCAGAACTGGGCTGACAAACGGAACCATGGTTTTGGTGGTTCTTGTGGtttggtggtttagtggttttTGACACTTTTTCTCGTCTCTCCATTTGAAATAATAAGCACAAGTCACTTATAGTGGTTCCTGTAATTATACTGCACATGCTGTGGcctgtgtgtttctgctgtAACAGCACTAACACCAGTTTTCTAACCTTTTGTTCTAACACTACATTCTAACTTATGTTAGAAttgattttatagatttttattttatttttgtatttgtgtagaAACATGCTGTATAGTctttaaacaggaaaataaatcttttcatttttaaat
>TU244360
TTTTCCAGTCAGCATGAAAAcaacgaagaagaagaaaagcaaaaaaaaaagctcgcTACCTGGTTGCCAGGACAACGCCGATGACCCGCGTTGTTACGTTTCGTGAGAATTGATTTTATGGCTGTCCCTTTATGGGCTCTCTCCCTTCCACTCCCTGCCATCATCCTGATCTCCGTTGGACTCTATATGCTGTTTCTTGCGGGTGTCTTATGGTGCCATCACTGTCTCAAGACCCAGTGCAGTCCTCAGTGTACAAACTGCTGCCCGAGTGTATCTCCTTTCGAGTACTGTCACATGTGCGCTCAGTCATGTGACTGTCACCCACCATCTCTTCACACGTGCCTTGACCACTCCTGCCCCACTTCTAATTGTGCCATGTGGGACTGCGCCTGCACCCCTCAGCCTCCTCAGTGTGACTCCATCAACTGCTTATGCTGCGAGATCAAGTTCAAATAGAGACAAAATGGAGGATTTGTACTTCCAAGTACAGAAGGTTTCCGTGTAGACTGAGCCGTGAATGTGGTCATGTGTTCAGAAGTGCTTTTGTGCTTATGTTTACAGCGAGTATGTGCTTCTTTTCTCCATTCGCTGCACATTTCGTTAAACACATCCTTTttttagaatgtctttgtgttttatgtttactGACGTCACATGCTTTTTCAGAGCTAGCATTCAAGTTCTTGCTTTCTGATGAGCTTTAACCTAGCTAGgccattttttcagtgtttactaACAGCAGGTGTGATATATTACTTGTGCTAAAGTTCCCAACATTTATACCAGCATTAAAAATTTACAAACAGAATCATGGCCTTTTCCATATCCAGGCTTTTTAATTTGACCATGTGATTGAGAGTTGTGATAGTTTTCACTGAAGAGAAATGTTATACACTTATTCAGATATGCAGAACTGGGCTGACAAACGGAACCATGGTTTTGGTGGTTCTTGTGGtttggtggtttagtggttttTGACACTTTTTCTCGTCTCTCCATTTGAAATAATAAGCACAAGTCACTTATAGTGGTTCCTGTAATTATACTGCACATGCTGTGGcctgtgtgtttctgctgtAACAGCACTAACACCAGTTTTCTAACCTTTTGTTCTAACACTACATTCTAACTTATGTTAGAAttgattttatagatttttattttatttttgtatttgtgtagaAACATGCTGTATAGTctttaaacaggaaaataaatcttttcatttttaaat
>XM_034310027.1
agaagaagaaaagcaaaaaaaaaagctcgcTACCTGGTTGCCAGGACAACGCCGATGACCCGCGTTGTTACGTTTCGTGAGAATTGATTTTATGGaaagttgattttatttattgtatcgTTTTATCCACGATAGTAAAACGCCGAGATGATGTCGTTAGCAAGTTAATGCGATGATTATAAGACGGTGGAATACACGAGTGTGATGATGACGGCTGTCCCTTTATGGGCTCTCTCCCTTCCACTCCCTGCCATCATCCTGATCTCCGTTGGACTCTATATGCTGTTTCTTGCGGGTGTCTTATGGTGCCATCACTGTCTCAAGACCCAGTGCAGTCCTCAGTGTACAAACTGCTGCCCGAGTGTATCTCCTTTCGAGTACTGTCACATGTGCGCTCAGTCATGTGACTGTCACCCACCATCTCTTCACACGTGCCTTGACCACTCCTGCCCCACTTCTAATTGTGCCATGTGGGACTGCGCCTGCACCCCTCAGCCTCCTCAGTGTGACTCCATCAACTGCTTATGCTGCGAGATCAAGTTCAAATAGAGACAAAATGGAGGATTTGTACTTCCAAGTACAGAAGGTTTCCGTGTAGACTGAGCCGTGAATGTGGTCATGTGTTCAGAAGTGCTTTTGTGCTTATGTTTACAGCGAGTATGTGCTTCTTTTCTCCATTCGCTGCACATTTCGTTAAACACATCCTTTttttagaatgtctttgtgttttatgtttactGACGTCACATGCTTTTTCAGAGCTAGCATTCAAGTTCTTGCTTTCTGATGAGCTTTAACCTAGCTAGgccattttttcagtgtttactaACAGCAGGTGTGATATATTACTTGTGCTAAAGTTCCCAACATTTATACCAGCATTAAAAATTTACAAACAGAATCATGGCCTTTTCCATATCCAGGCTTTTTAATTTGACCATGTGATTGAGAGTTGTGATAGTTTTCACTGAAGAGAAATGTTATACACTTATTCAGATATGCAGAACTGGGCTGACAAACGGAACCATGGTTTTGGTGGTTCTTGTGGtttggtggtttagtggttttTGACACTTTTTCTCGTCTCTCCATTTGAAATAATAAGCACAAGTCACTTATAGTGGTTCCTGTAATTATACTGCACATGCTGTGGcctgtgtgtttctgctgtAACAGCACTAACACCAGTTTTCTAACCTTTTGTTCTAACACTACATTCTAACTTATGTTAGAAttgattttatagatttttattttatttttgtatttgtgtagaAACATGCTGTATAGTctttaaacaggaaaataaatcttttcatttttaaata
>XM_034310028.1
TGGTTTTCCAGTCAGCATGAAAAcaacgaagaagaagaaaagcaaaaaaaaaagctcgcTACCTGGTTGCCAGGACAACGCCGATGACCCGCGTTGTTACGTTTCGTGAGAATTGATTTTATGGCTGTCCCTTTATGGGCTCTCTCCCTTCCACTCCCTGCCATCATCCTGATCTCCGTTGGACTCTATATGCTGTTTCTTGCGGGTGTCTTATGGTGCCATCACTGTCTCAAGACCCAGTGCAGTCCTCAGTGTACAAACTGCTGCCCGAGTGTATCTCCTTTCGAGTACTGTCACATGTGCGCTCAGTCATGTGACTGTCACCCACCATCTCTTCACACGTGCCTTGACCACTCCTGCCCCACTTCTAATTGTGCCATGTGGGACTGCGCCTGCACCCCTCAGCCTCCTCAGTGTGACTCCATCAACTGCTTATGCTGCGAGATCAAGTTCAAATAGAGACAAAATGGAGGATTTGTACTTCCAAGTACAGAAGGTTTCCGTGTAGACTGAGCCGTGAATGTGGTCATGTGTTCAGAAGTGCTTTTGTGCTTATGTTTACAGCGAGTATGTGCTTCTTTTCTCCATTCGCTGCACATTTCGTTAAACACATCCTTTttttagaatgtctttgtgttttatgtttactGACGTCACATGCTTTTTCAGAGCTAGCATTCAAGTTCTTGCTTTCTGATGAGCTTTAACCTAGCTAGgccattttttcagtgtttactaACAGCAGGTGTGATATATTACTTGTGCTAAAGTTCCCAACATTTATACCAGCATTAAAAATTTACAAACAGAATCATGGCCTTTTCCATATCCAGGCTTTTTAATTTGACCATGTGATTGAGAGTTGTGATAGTTTTCACTGAAGAGAAATGTTATACACTTATTCAGATATGCAGAACTGGGCTGACAAACGGAACCATGGTTTTGGTGGTTCTTGTGGtttggtggtttagtggttttTGACACTTTTTCTCGTCTCTCCATTTGAAATAATAAGCACAAGTCACTTATAGTGGTTCCTGTAATTATACTGCACATGCTGTGGcctgtgtgtttctgctgtAACAGCACTAACACCAGTTTTCTAACCTTTTGTTCTAACACTACATTCTAACTTATGTTAGAAttgattttatagatttttattttatttttgtatttgtgtagaAACATGCTGTATAGTctttaaacaggaaaataaatcttttcatttttaaata

Function

NR:

description
keratin-associated protein 5-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244359 True 1353 TUCP 0.40 4 6130783 6134571
TU244360 False 1234 TUCP 0.41 4 6130783 6134571
XM_034310027.1 False 1328 mRNA 0.40 4 6130809 6134572
XM_034310028.1 False 1238 mRNA 0.41 4 6130780 6134572

Neighbor

gene id symbol gene type direction distance location
zgc:100868 NA coding upstream 1969 6119493 ~ 6128811 (+)
LOC113528511 NA coding upstream 104941 6024296 ~ 6025839 (+)
kcnj19a si:dkey-106c17.3,LOC108274233,LOC108432058,LOC107581800,LOC107654469,LOC107737881,LOC107674737 coding upstream 306580 5788721 ~ 5824200 (+)
asic2 asic2,LOC108411330,LOC107654528,LOC107674665,LOC107720021,LOC107737939 coding upstream 503800 5108421 ~ 5626980 (+)
hrob LOC108259294 coding upstream 1026906 5096322 ~ 5103874 (+)
cln3 cln3 coding downstream 3528 6138100 ~ 6147618 (+)
gdpd3a LOC108256211,LOC103040887,LOC108411042 coding downstream 46227 6180799 ~ 6188261 (+)
LOC113527922 si:ch211-11k18.4,ehd3,LOC108260452,LOC108411040,LOC103375184 coding downstream 63068 6197640 ~ 6204209 (+)
LOC113528207 NA coding downstream 70968 6205540 ~ 6212540 (+)
rabep2 rabep2 coding downstream 80714 6215286 ~ 6222046 (+)
G206339 plcd3,plcd3a,LOC108432051,LOC107674588,LOC107581738 non-coding upstream 138708 5990607 ~ 5992072 (+)
G206291 NA non-coding upstream 166699 5937248 ~ 5964081 (+)
G206301 LOC108257121 non-coding upstream 186348 5940879 ~ 5944432 (+)
G206289 NA non-coding upstream 205595 5918445 ~ 5925185 (+)
LOC117599005 NA non-coding upstream 260974 5868862 ~ 5869806 (+)
G206540 NA non-coding downstream 349107 6483679 ~ 6509229 (+)
G206722 hcrt non-coding downstream 416319 6550891 ~ 6551152 (+)
G206801 NA non-coding downstream 554884 6689456 ~ 6737847 (+)
G206835 ptrf non-coding downstream 596113 6730685 ~ 6810353 (+)
G206942 NA non-coding downstream 764270 6898842 ~ 6931386 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other upstream 232580 5889552 ~ 5898200 (+)
G206166 NA other upstream 469932 5657612 ~ 5660848 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 1116264 5003548 ~ 5014516 (+)
psmc3ip psmc3ip other upstream 1409312 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 1419464 4692477 ~ 4711316 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 25762 6160334 ~ 6175366 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other downstream 45524 6180096 ~ 6194964 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other downstream 117772 6252344 ~ 6260857 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other downstream 949869 7084441 ~ 7102215 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other downstream 973606 7108178 ~ 7131967 (+)

Expression


Co-expression Network