G206628


Basic Information

Item Value
gene id G206628
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6203312 ~ 6204196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244662
ttttattttactttattatcaGAGGTACAATAAGAAACCAGTAAAAATGACAAAGGCATACAAACACTGTTTATTCTTGTTTagtaaaatgattcatttggaTGTTGTACTGTAAACAATAAATGATCACTTCTTTTTGTTGTGTTAAAATTatacagtgatacagtgagGTACACATTTTTAAGCTTCATGTTGGAATGAGAACTTCAAAATAGCTCAACTGATGCACAACATGATGCACATAAAGGCAGTGCGAGGCATTCGGTTCAAAACACATGATGCAATGCTGTAAGGTTGTAGTGGAGAGAATTTGATAGGTTAATAAGATTGTTAAAAAATACTGAACAGTGCATGCCTTGGCTGGGACATGTTCTAAGTGCGTGCCAAAACAGCAACCTTCAGCACATTGCGTTGGCAAtatgaggaaagaaaaacattgaTAAATAGTTGATAAATTCACTTCTGCCCCCAACAGTGTTGAAAGATGCTGGTGTGTATCGTCTGGAGGGTGATCCTGGAAAGCTCGAGTCTACGTTACCATTGTTCTTCTACAGTGCAGGAATGTTTAGTGGTTACTGATGTCCTTATTGATTTCTTTACTTGTTCACTGCTCTTTCCATTCATCACTCCAGTAGATCTTCAACCGAAAACCTTAGTCCATATCCTGATCACCAACGCTCTGCCGGAGATACTCCTCATACAGCTTTCTTTTTAGTTTTCACCACCTCCTGCACATACTCCAGTTTTTCCTGCAACTGCCTCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244662 True 766 lncRNA 0.38 2 6203312 6204196

Neighbor

gene id symbol gene type direction distance location
nudt9 nudt9,LOC107590571 coding downstream 43140 6149355 ~ 6160172 (-)
arhgap23a LOC108276663 coding downstream 97428 6026279 ~ 6105884 (-)
plcd3a plcd3,plcd3a,LOC108432051,LOC107581738,LOC107654535,LOC107591554 coding downstream 185325 5981200 ~ 6017987 (-)
nmt1a nmt1,LOC108432052,LOC102778525 coding downstream 224939 5962688 ~ 5978373 (-)
cdk21 LOC108274791 coding downstream 264881 5934040 ~ 5938431 (-)
atp2a1 atp2a1,LOC108411044,LOC107755578,LOC107567734,LOC107690283,LOC107590562 coding upstream 19274 6223470 ~ 6238688 (-)
hsp70.3 LOC108259092 coding upstream 44586 6248782 ~ 6251486 (-)
aclya acly,aclya,LOC107729187,LOC107567706,LOC107755575 coding upstream 73020 6277216 ~ 6303481 (-)
cnp cnp coding upstream 103474 6307670 ~ 6312808 (-)
ttc25 ttc25 coding upstream 111103 6315299 ~ 6323127 (-)
LOC113527891 NA non-coding downstream 13386 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 249808 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 475632 5721634 ~ 5727680 (-)
G206164 NA non-coding downstream 571393 5631715 ~ 5631919 (-)
LOC113528378 NA non-coding downstream 918407 5280730 ~ 5284905 (-)
G206649 NA non-coding upstream 69620 6273816 ~ 6346363 (-)
G206924 NA non-coding upstream 620700 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 622172 6826368 ~ 6828146 (-)
G207057 NA non-coding upstream 898052 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 972336 7176532 ~ 7176755 (-)
G206604 NA other downstream 8316 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 242262 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 252315 5940862 ~ 5950997 (-)
G206282 NA other downstream 361835 5841137 ~ 5841477 (-)
G206236 NA other downstream 446579 5754767 ~ 5756733 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 441862 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 1114407 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 1221521 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1355571 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 2045689 8249885 ~ 8267638 (-)

Expression


Co-expression Network