G206649


Basic Information

Item Value
gene id G206649
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6273816 ~ 6346363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU244696
gCCATATCACTCATCTCTAATTTGCAAACAGAGTTACTGAAATTGTGTTTCATTCTCTGAAGTTGACTTTGAACAGGAAATGACACTCTACAGATGGACAGCGTACATCCTGAAGGGCTACAGCACTGCAAAGTTTTAATTTGTTAGCCAAagtatgtcacacacacacacacacacacacacacacacacacacacacacacacacacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244696 True 212 lncRNA 0.41 2 6273816 6346363

Neighbor

gene id symbol gene type direction distance location
hsp70.3 LOC108259092 coding downstream 22330 6248782 ~ 6251486 (-)
atp2a1 atp2a1,LOC108411044,LOC107755578,LOC107567734,LOC107690283,LOC107590562 coding downstream 35128 6223470 ~ 6238688 (-)
nudt9 nudt9,LOC107590571 coding downstream 113644 6149355 ~ 6160172 (-)
arhgap23a LOC108276663 coding downstream 167932 6026279 ~ 6105884 (-)
plcd3a plcd3,plcd3a,LOC108432051,LOC107581738,LOC107654535,LOC107591554 coding downstream 255829 5981200 ~ 6017987 (-)
znf385c znf385c coding upstream 4301 6350664 ~ 6443282 (-)
dhx58 dhx58 coding upstream 114760 6461123 ~ 6467897 (-)
kat2a kat2a,LOC107755568,LOC107729177,LOC107690294,LOC107687008 coding upstream 121991 6468354 ~ 6481284 (-)
rab5c rab5c,LOC104958098 coding upstream 137308 6483671 ~ 6501470 (-)
kcnh4a kcnh4,LOC107568301 coding upstream 160341 6506704 ~ 6548501 (-)
G206628 NA non-coding downstream 69620 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 83890 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 320312 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 546136 5721634 ~ 5727680 (-)
G206164 NA non-coding downstream 641897 5631715 ~ 5631919 (-)
G206924 NA non-coding upstream 478533 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 480005 6826368 ~ 6828146 (-)
G207057 NA non-coding upstream 755885 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 830169 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 881022 7227385 ~ 7227664 (-)
G206604 NA other downstream 78820 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 312766 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 322819 5940862 ~ 5950997 (-)
G206282 NA other downstream 432339 5841137 ~ 5841477 (-)
G206236 NA other downstream 517083 5754767 ~ 5756733 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 299695 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 972240 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 1079354 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1213404 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1903522 8249885 ~ 8267638 (-)

Expression


Co-expression Network