G206923


Basic Information

Item Value
gene id G206923
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6826368 ~ 6828146 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245005
GGCATATGCAATTCCAATATCCTTCAATCATtcattagatagatagatagatagatagatagatcagagGGAAATTGACCTATGatagcagcacagagagttagTAGTATActaaaagcaattaaaaaagcAGTTTATCCTGGgtagggttgtggtggatccagagcctttcccaggaacactggttgtgaggcaggaatacgcCTTGGCACCATTCACACCCTCATATACACATGGACCCAGAGAGAATGTACactgaaactccacacaggcattAATCTGAGCACAGGATAGAACTGCAAAGCCTAGAGATGGGGACCCTTGCTATACCACCAAACtttaatgtgtaatatatatatattttttttaaaaaagtactgtATCCATCATACACTACACCATTAAAACATTACTCAATCAATATTTCCCATCCCAAACATTCTGTAACTCCCCCTTTCAGCTGTGTTCATATAAGGGATGACATAGCAACCACTGTAGTAGTCAAACTATGTAGTCCACAACAATTTTCCTCTCGAGGACAATAAagtatactactactactactactactactactacaacagACACCCTAGAAACCCCGGTATAACCTTGGTTTCCAATAAAAGACATGGCTAATCACGGATATGTTTAATAGATAACTGGAAACTCAGTGTATGGGACagaagaaatgtgcaaaaaatgctTCCTTTGTATGAGCCTTCCTTCGTAATAccctgcatttaaaaaaaacagactctgATAAGAATTTCTATTAGATGTCTCATTATGAAGGCATTCAGCAAGGCCTGTCCCAGCTGATCCCACCACTGTTATGTAACCGATTTCACAACCATCACAAACTACCTGAAGACTCAGCTGTATCGAAAACAACTGAGAATGATGATACACCGAAACACCCTCTGCATTCACCctaagtgcatgtgtgtgcatatgccTGTCTAGGTGTGTCATCTTTTTCCCTGTTGTCATCTGTTTGTGTGGTTGTTGGCCTCTCATTGGGTACATTCATGTTTCAAGTTAGTCTTCTTTGAcctattaattaatattattcataGTTTCACAGATTTCTTTGTGATTAGTGTTTGCTAGTGTTTACTCCAGGCTTTGTTTTTACTAGCAGGTTCTTACCATTATCATGCACTTGTTTCTGATCAATCAGTTAAATcttaaaatattcagaaattgTTCTTTGTTTATCATATTTGTCATcaaaataatatcaaaatatattttgattctTTTCAGGTACATTAAAGTCTTTAAACCAGCTAAACCACCATGGActgaaggaaaacattttacaatttttgatttatttttgttgcaaTATCTTAAGTTCTCACTAGAATATCATCAATGTGCCTGCATTCAGTGCTTGAGCAGTACACATTTGGACATAGTGCTTTATCTGGTGAGACCGCCATCAGCACGATACAGGCATCAACAATAGGAAAGTAAAAGTGCAATCCGACCAGCAgcacttttagtttttttaaaagctcTGTTCTTGGATTCAATTCAAACTAACTTATaagtcactttgaataaaagaATCTGCTGcaagaataaatgtaaaatatatgacAGATGATATCAGAGTGCTGATCCACTACAGGAGTACAATAACGTGGTCCACTGGGTCCATAATACTGAGGAAAAACCCTTTCTAGATGAGCATCCCTTCCTGATTGGGCCTAAGACTTGCGACTGACTGTCTAGTGAAGTCTGTGTCTTGGTTCTTCAATGTGCATTGTGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245005 True 1779 lncRNA 0.38 1 6826368 6828146

Neighbor

gene id symbol gene type direction distance location
atp6v0a1a atp6v0a1,LOC107567567,LOC105890791 coding downstream 5999 6794354 ~ 6820369 (-)
cavin1a ptrf coding downstream 32833 6773433 ~ 6793535 (-)
stat3 stat3 coding downstream 61454 6734117 ~ 6764914 (-)
si:ch211-210g13.5 si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488 coding downstream 194023 6557138 ~ 6632345 (-)
hcrt hcrt coding downstream 270484 6550541 ~ 6555884 (-)
stk17al LOC108258001 coding upstream 18749 6846895 ~ 6860907 (-)
tmem86b LOC108256452 coding upstream 60516 6888662 ~ 6890923 (-)
gys1 gys1,LOC108414029,LOC107653402,LOC107690304,LOC107731036 coding upstream 70861 6899007 ~ 6916995 (-)
zgc:55558 zgc:55558,p-ras,LOC108258948,LOC108413997,LOC107653435,LOC103023536,LOC107567516,LOC105894964,LOC103374945 coding upstream 109408 6937554 ~ 6944028 (-)
slc17a7a slc17a7a,LOC108260804,LOC108413988,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding upstream 125967 6954113 ~ 6978133 (-)
G206924 NA non-coding downstream 608 6824896 ~ 6825760 (-)
G206649 NA non-coding downstream 480005 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 622172 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 636442 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 872864 5952798 ~ 5953504 (-)
G207057 NA non-coding upstream 274102 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 348386 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 399239 7227385 ~ 7227664 (-)
G207226 NA non-coding upstream 409527 7237673 ~ 7237881 (-)
G207227 NA non-coding upstream 412095 7240241 ~ 7240907 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 100203 6646058 ~ 6726165 (-)
G206604 NA other downstream 631372 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 865318 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 875371 5940862 ~ 5950997 (-)
G206282 NA other downstream 984891 5841137 ~ 5841477 (-)
G207231 spsb3 other upstream 490457 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 597571 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 731621 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1421739 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 1451621 8279767 ~ 8289808 (-)

Expression


Co-expression Network