G206942


Basic Information

Item Value
gene id G206942
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6898842 ~ 6931386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245030
TCTATTCTACAGCTGACACAGAATTTCAAAATGGTGTGTTCGTGTTCATTACAGTACATAAGCTACAACCTTACATTCAAGTTTCTATCACATTCATTTTGAGTTATGTtccatattttttgtttctgagGAGTCATTATGAAAACAGAGTCCACGGACAATAAGTCAGAGAAATACAGATTTATTCTCACACCAAGGCAACGCTTATATCATCTGAGTTTATATTATCTGAAGTTTATATGAAACTATTGTCAAAAACAGAGAACAGTTTTCTACCTCTGCTGTGCCTTGACTACCATAAAACTGGGACAAGGCTCGAGAACaataatggaataaaaaagATCAGACGGATCCAGTGATACTGAAGATTGTCCTAGCTCCGTTTTTCTCTGATGCTGGTTTGTGGTAAAATGCCTTGCCTTGTATTACAATCCCACTGTTTTTTGGTAAAAAGAGTATTTTCAGCTTCACTGGCTCTTTAGAGGTATAATACTATAGGACAGAAGAGACTGATGTTACTCACACAGCAACTGGCTACCATTTCTATTCAACTTCTCACTGAAGCGGCATCCCCTAGTCTCGAATAAAAAGATCTGAACATATCTTGAGCAATCTGAGTCTACTAGTAAGTGCGGAAGACATCAATTCACctatttttgaaataaaatacagtagcTCCTCATGTGAACAGTATAGTTTCctgaaataaatacagtttacTTTTCAAACCCCAGAAATAACCAACAGGCAATGAACAGgtcaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcacgtgtgagtgtgtgtagtgttagtTTTTCTCAGGTAGGTCAACTGGCAGGCTTTTATTCTTGTTTGGCAGACTGTAAGGTTGCCGGATGTTCAGGCGGTCTTTCTCAGCCTCCAGATCTTCGTCATATGTCTCGTCCTCGTCTTCAGCCTCGCTGTGGTGTGGGGACGAATGGAGCGAGTGAGCAGGCGAGGGTGGCACCGAGGCAGGACGGGGGTAACGGAAACCCGTAG
>TU245032
TCTATTCTACAGCTGACACAGAATTTCAAAATGGTGTGTTCGTGTTCATTACAGTACATAAGCTACAACCTTACATTCAAGTTTCTATCACATTCATTTTGAGTTATGTtccatattttttgtttctgagGAGTCATTATGAAAACAGAGTCCACGGACAATAAGTCAGAGAAATACAGATTTATTCTCACACCAAGGCAACGCTTATATCATCTGAGTTTATATTATCTGAAGTTTATATGAAACTATTGTCAAAAACAGAGAACAGTTTTCTACCTCTGCTGTGCCTTGACTACCATAAAACTGGGACAAGGCTCGAGAACaataatggaataaaaaagATCAGACGGATCCAGTGATACTGAAGATTGTCCTAGCTCCGTTTTTCTCTGATGCTGGTTTGTGGTAAAATGCCTTGCCTTGTATTACAATCCCACTGTTTTTTGGTAAAAAGAGTATTTTCAGCTTCACTGGCTCTTTAGAGGTATAATACTATAGGACAGAAGAGACTGATGTTACTCACACAGCAACTGGCTACCATTTCTATTCAACTTCTCACTGAAGCGGCATCCCCTAGTCTCGAATAAAAAGATCTGAACATATCTTGAGCAATCTGAGTCTACTAGTAAGTGCGGAAGACATCAATTCACctatttttgaaataaaatacagtagcTCCTCATGTGAACAGTATAGTTTCctgaaataaatacagtttacTTTTCAAACCCCAGAAATAACCAACAGGCAATGAACAGgtcaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcacgtgtgagtgtgtgtagtgttagtTTTTCTCAGGTAGGTCAACTGGCAGGCTTTTATTCTTGTTTGGCAGACTGTAAGGTTGCCGGATGTTCAGGCGGTCTTTCTCAGCCTCCAGATCTTCGTCATATGTCTCGTCCTCGTCTTCAGCCTCGCTGTGGTGTGGGGACGAATGGAGCGAGTGAGCAGGCGAGGGTGGCACCGAGGCAGGACGGGGGTAACGGAAACCCGTAG
>TU245037
TCTATTCTACAGCTGACACAGAATTTCAAAATGGTGTGTTCGTGTTCATTACAGTACATAAGCTACAACCTTACATTCAAGTTTCTATCACATTCATTTTGAGTTATGTtccatattttttgtttctgagGAGTCATTATGAAAACAGAGTCCACGGACAATAAGTCAGAGAAATACAGATTTATTCTCACACCAAGGCAACGCTTATATCATCTGAGTTTATATTATCTGAAGTTTATATGAAACTATTGTCAAAAACAGAGAACAGTTTTCTACCTCTGCTGTGCCTTGACTACCATAAAACTGGGACAAGGCTCGAGAACaataatggaataaaaaagATCAGACGGATCCAGTGATACTGAAGATTGTCCTAGCTCCGTTTTTCTCTGATGCTGGTTTGTGGTAAAATGCCTTGCCTTGTATTACAATCCCACTGTTTTTTGGTAAAAAGAGTATTTTCAGCTTCACTGGCTCTTTAGAGGTATAATACTATAGGACAGAAGAGACTGATGTTACTCACACAGCAACTGGCTACCATTTCTATTCAACTTCTCACTGAAGCGGCATCCCCTAGTCTCGAATAAAAAGATCTGAACATATCTTGAGCAATCTGAGTCTACTAGTAAGTGCGGAAGACATCAATTCACctatttttgaaataaaatacagtagcTCCTCATGTGAACAGTATAGTTTCctgaaataaatacagtttacTTTTCAAACCCCAGAAATAACCAACAGGCAATGAACAGgtcaacagtgtgtgtgtgtgtgtgtgcgtg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245030 True 1039 lncRNA 0.41 2 6898842 6899932
TU245032 False 1037 lncRNA 0.41 2 6898842 6899932
TU245037 False 788 lncRNA 0.37 2 6898842 6931386

Neighbor

gene id symbol gene type direction distance location
aspdh aspdh coding upstream 370 6893231 ~ 6898472 (+)
nkiras2 nkiras2,LOC107687022,LOC107590605,LOC107729182,LOC107755561 coding upstream 552458 6343263 ~ 6346384 (+)
si:ch73-141c7.1 LOC108258527 coding upstream 622131 6271135 ~ 6276711 (+)
hsd17b1 hsd17b1 coding upstream 630844 6264199 ~ 6267998 (+)
rabep2 rabep2 coding upstream 676796 6215286 ~ 6222046 (+)
eps8l1a LOC108258326 coding downstream 75762 7007148 ~ 7019641 (+)
LOC117598990 LOC108258307 coding downstream 89085 7020471 ~ 7045978 (+)
LOC117599002 NA coding downstream 96389 7027775 ~ 7033434 (+)
LOC113528443 NA coding downstream 234818 7166204 ~ 7174621 (+)
LOC113527945 NA coding downstream 247331 7178717 ~ 7193900 (+)
G206835 ptrf non-coding upstream 88489 6730685 ~ 6810353 (+)
G206801 NA non-coding upstream 160995 6689456 ~ 6737847 (+)
G206722 hcrt non-coding upstream 347690 6550891 ~ 6551152 (+)
G206540 NA non-coding upstream 389613 6483679 ~ 6509229 (+)
G206339 plcd3,plcd3a,LOC108432051,LOC107674588,LOC107581738 non-coding upstream 906770 5990607 ~ 5992072 (+)
G207025 NA non-coding downstream 123000 7054386 ~ 7058819 (+)
G207084 NA non-coding downstream 363099 7294485 ~ 7296973 (+)
G207111 NA non-coding downstream 386641 7318027 ~ 7318360 (+)
G207140 NA non-coding downstream 454630 7386016 ~ 7388543 (+)
G207155 NA non-coding downstream 508691 7440077 ~ 7440281 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other upstream 637985 6252344 ~ 6260857 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other upstream 703878 6180096 ~ 6194964 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other upstream 723476 6160334 ~ 6175366 (+)
si:ch211-198p11.6 LOC108276725 other upstream 764270 6130780 ~ 6134572 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other upstream 1000642 5889552 ~ 5898200 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other downstream 153055 7084441 ~ 7102215 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other downstream 176792 7108178 ~ 7131967 (+)
spsb3a spsb3,spsb3a,LOC107689049 other downstream 377821 7309207 ~ 7321965 (+)
G207480 LOC107834952 other downstream 921805 7853191 ~ 7853509 (+)
trnas-cga_1 NA other downstream 1076800 8008186 ~ 8008411 (+)

Expression


Co-expression Network