G207231 (spsb3)


Basic Information

Item Value
gene id G207231
gene name spsb3
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7318603 ~ 7321962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245410
TTTTTAATCCTTTAttatgcttaaaaaaacaacctaCATATCCAGCCTTTCTTCCCCCGTGTATGATTTTCATCCAACTCCTTTAATCATATATGAGTTAAAGCCCATGCTTGACATATAGTaaagggagacagagaaaagagaattaGATAATACATACAATATGTACAGAACAGAGCAAAAAGGATctatatgcatttatatatgcATACAATGAGAAGGAAAAGTGCTTTAATGCATAACAAagacttagattttttttttgtgaattacaAAACCTATACACACTTCCATAGTTGATAAATACAACCCTCACAGAgagatgtaaaaatgaatgGCTATAAGAACAAGGGCAGGTACTTTGTTCAGACAGCATATGAATCGAGAACATCAGCTGACTCTAGCTGAGTTAAAAGAAGATccaacttcttttttttgcaaaacaaacattaacTTCACATTTGTTGGTTTACATCGTGGGTGTATCCTCTTTCATCTCAAGTGGGGCATTAAGTGTTTTTGCTTTGCATCAGGATAGAAGTGGCCCTAGTGAGAAGCCAAAGAGAGGTGATGAAGATGGCACAGAGCACCACAGTTGCTGTGTTAAGACCAAAGtgagttcaaatcacaggttcatgcAGGTATTTGACGGCagcattttacacatttgtgCACAATTCACAGGCATCTACTCTTGCACAACAGTACTATGCCAGTGATGAACAAAAACTCAGCCAGGATTTTGTAAAACTGCATCGGTATGATTATAACTGTCGGCAAAAGACCACACCCATTAGACGTTAATACACTAGCCCATTGACTTGGCAAAGGTACGTGgagtaaaatgattaaaagcaGGAATGagtgttttaaaaatctcatattAAATGTggaataatacaaaaatgtcaTCTGAAAGGACAGCAGAAAAGTCAATAGATTGATAGTAATAAAGACGGAATATAATTTGTCAGGTTCAGGTTGTGGAAAAGTGTCAGGAAAGTGGCTTTGACAGAGGTACCAACATTGTTAACAAAAAGATCCTAACAGGCAGAGATAACGACTAGGATCTTAACAGAAAAACCCTAGCGTATATTGGTGGACGAGATGGGATAACAGGATAAAAGGTAAACAGCGCATTCTGCTCTGCGCTTGTACCAACCAGAGGCCATAGTATGCCCGCTTGTCTTCTATTATGTCAGAAACTCAGCAGAATGGTTTCCAAATACAGGGGTGTGAACTCTGACCTGATAAATTTGATGCAAGATGAGAACCAGTATCaggaacaattttttttttttttaaatttcacatcACCTTCAGTGTCTCATATTGCTGTAGCAAGCAGACTAAAATTGCAATATGTGTATCATCTGTTCAATTCATATCTGTTTTGAAATTGTATTCCTGCAAAACAAACCCGGATTTCTTAAAAAATTTCtgaaaattttccaaaaaaaaaaaaaaaaaaaaaaaaaaatccacacaacTGGCTTCATCCATACACATTTAAAGGTCACCAGCAGGGCGATACGAGAATTTGAACATGTAAGAtgcagagaaaacagaaaaagacatCAGAAAGCTGGCATCATTGAAGCTGCATACAAATGCAGTTAAAATGTAGTTTGATGATGGAATGACATACACTGATATGTCTGCCAATTCGGCTCAAATCAGTGTAGAGAAATGCTCAGTCATGAGCGTCTGAAGATTTTGCCAAGACCACAACTTGGGAAGGAAAAGACAAGTTGTTGACAATCTTCCAGAAATGGCAGTGACCATGACGATATTGCGGGCTCAACAAATTTACCCCATTTATTGACCTGGTCACTGCCATTTCTAGGAGGTTGACATTTACTTGTCCTTTCTTCTGGGTAAGAACAAATGAACATTCAATATACacataatactaaaaaaaaagtatataggCCAACATTAGTATATAGGCCTAAAACATCATATTCAGAGTCTAGATTGTCTGCTAAAATAGAAAACAATGCTGTTTTTTGTACATTCATAGTCAAGGTAATAAATGGCTAAATtcagaaaacaaatgttttgttttcttgatATCAAAACAGATATGGATCGAACGGATGATGCATTGATTAATCACAAAAATACTACAGCCAAACCGTAGATATTGGGACCTCTGCTTTGCTATATACCATTATATTGTGGCATAGCTGTATAAAAGACATTAATATGATTCTTCCAAACTTCTCAAATGCAGCAACTTCAAGAAATAGTTCAATGTATCATACAGTACTAGATTCAGCATATCACTGCTATACTGATGAGACCTGGTGTCAAACTAGTCACCTCGTTTGCAAACATGGATGGTGAATTACATGTTATATAGTACGTCAAATTATAAGTGGTAATTAAACCACTTATCCATCTGAGTGTCCATTTGACTCATTCTACTTGTTTGGATATAAGCTATTCTGAAGTACAGGTAGACAAGGGCACAGTGCTGAAGGTTATAGGTAAAGATAATACTGagattttatataacagttcaTGTGGGATGGAAAAGTGTGACATATTTTTTGTTCCAAAACCCTGAAAGAGACAGCAAGGACAGAGCAGGAACTTTCAGCACTATGCTATAAAAGAGAAAGACCGTTCACTGTTTAGTCGTGATACATCAgagtgtatgtgcgtgtgtctTTTACATAATCTGTACATCCAGAAAGTATTGAATTTTGCATGTCTGACTATGATCCACacaatgaaatgcagtgttAACAGTCCCACAGGAGATTAAAATCAAATGGTATCCTCAATGTGGAGAGGTTTCTTGTTACATCAGATACATCAACATCTTaaagacgtttttttttttaaagttttgtcTCAATCCACTGTACCACTGTATATGAGTCTGAAACTGAAAAGACTTGACAATGTATTAactgtaatagtgtgtgtatgggtaTATGTGTatgggtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcgccTCAGGTCCAGCGGCAGCGTTTCCTCTGGCAGGCCTCGGGGTCGGAAGCGCAGCCGTCTGATTCGCTGCCTGAAGAGGGCCCAGctggtgtatttgtgtttgagtTTGTATGCGTATGCGAGTGGTCTAAGCTTAGCACCCAGCCAAGTTTGGAATGTAGGAGGTGCCTGAGTCCTGGTGGGAGGGGCAGCACTCTGAGGGCGTCGGCTCCTGAAGGGAGGAGCTTACGCAGACGCCAGCAGCAGAGGTACTGGAGTGAGGTGGGGGCGGAGACTGAGCGGATCACCTTCATGCTGCTTTTGGCAGCTGTGGAACATGCCATGGGGTACACACGCTTGTTCTGCAGCTCTGTAGCAGC

Function

symbol description
spsb3 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of SCF ubiquitin ligase complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245410 True 3360 TUCP 0.39 1 7318603 7321962

Neighbor

gene id symbol gene type direction distance location
trnac-gca_20 NA coding downstream 44226 7274306 ~ 7274377 (-)
trnac-gca_19 NA coding downstream 45475 7273057 ~ 7273128 (-)
trnac-gca_17 NA coding downstream 46277 7272255 ~ 7272326 (-)
trnac-gca_16 NA coding downstream 47626 7270906 ~ 7270977 (-)
rpl19 rpl19,LOC108260855,LOC107084780,LOC108413899,LOC101075516,LOC107378566 coding downstream 93375 7217582 ~ 7225228 (-)
mapk8ip3 mapk8ip3 coding upstream 12951 7334913 ~ 7376030 (-)
jpt2 hn1l coding upstream 59634 7381596 ~ 7388394 (-)
tmem11 tmem11,LOC107568541,LOC107661149,LOC107552488 coding upstream 97735 7419697 ~ 7423186 (-)
phospho1 phospho1 coding upstream 110029 7431991 ~ 7437181 (-)
znf652 znf652,LOC108258819,LOC106607259 coding upstream 124601 7446563 ~ 7467835 (-)
G207254 NA non-coding downstream 4948 7312082 ~ 7313655 (-)
G207205 cacnb1,LOC108413880 non-coding downstream 56490 7255625 ~ 7262113 (-)
G207227 NA non-coding downstream 77696 7240241 ~ 7240907 (-)
G207226 NA non-coding downstream 80722 7237673 ~ 7237881 (-)
G207221 NA non-coding downstream 90939 7227385 ~ 7227664 (-)
G207540 NA non-coding upstream 621716 7943678 ~ 7948171 (-)
G207565 NA non-coding upstream 707244 8029206 ~ 8029449 (-)
G207571 NA non-coding upstream 711320 8033282 ~ 8036848 (-)
G207653 mrc2 non-coding upstream 788696 8110658 ~ 8114574 (-)
G207650 NA non-coding upstream 854396 8176358 ~ 8200778 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 592438 6646058 ~ 6726165 (-)
G206604 NA other downstream 1123607 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 1357553 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 1367606 5940862 ~ 5950997 (-)
G206282 NA other downstream 1477126 5841137 ~ 5841477 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 103755 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 237805 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 927923 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 957805 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 962512 8284474 ~ 8284592 (-)

Expression


Co-expression Network