G207480 (LOC107834952)


Basic Information

Item Value
gene id G207480
gene name LOC107834952
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7853191 ~ 7853509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245701
CAGGTCCTGTATCCTGGGCAGTGGATGTCGGTCAGGAACAGTTTTCTTGTTCAGGAGGCGATAATCAATGCACAGCCGCAGGCTCCCATCTTTTTTTCTGACGCAAACAACTGGAGCAGTATACGGAGACTTGGATTTAACTATCCAGCCTCTGAGCAACAGTTCCTGTATGTACTCCTTCACCTCTTTGAAGAGTGGCTTTGGGACCGAGGAGTAAGTTCTTTGTACAGGTATTGCATCCCTAAGAGTGAGCGACATCTGCAGGCTTGGTATGCATCCGATATCGTTGCTGTCTCGTGCAAAGGCACCAGCTTCTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245701 True 319 TUCP 0.49 1 7853191 7853509

Neighbor

gene id symbol gene type direction distance location
LOC113528203 adcy10 coding upstream 355658 7483781 ~ 7497533 (+)
dhrs7b dhrs7b,LOC107661099,LOC107755107,LOC107745957 coding upstream 436395 7407546 ~ 7416796 (+)
cramp1 cramp1 coding upstream 446040 7389075 ~ 7407151 (+)
nme3 nme3,LOC107661191 coding upstream 518955 7328120 ~ 7334236 (+)
mrps34 mrps34,LOC107567325,LOC107670906 coding upstream 526097 7323960 ~ 7327094 (+)
itga2b itga2b coding downstream 6715 7860224 ~ 7880064 (+)
fam171a2a fam171a2,LOC108258145 coding downstream 30640 7884149 ~ 7931511 (+)
syngr1a syngr1a,LOC108261039,LOC108413620 coding downstream 79857 7933366 ~ 7950248 (+)
tcap LOC108261065,LOC108413611,LOC107684635 coding downstream 100285 7953794 ~ 7955245 (+)
itgb3a LOC108279461,LOC108413591 coding downstream 157024 8010533 ~ 8027891 (+)
LOC113528563 NA non-coding upstream 161522 7686051 ~ 7691669 (+)
G207309 NA non-coding upstream 285378 7564303 ~ 7567813 (+)
G207158 NA non-coding upstream 324453 7444823 ~ 7528738 (+)
G207157 NA non-coding upstream 409438 7443069 ~ 7443753 (+)
G207155 NA non-coding upstream 412910 7440077 ~ 7440281 (+)
G207483 NA non-coding downstream 1922 7855431 ~ 7855889 (+)
G207570 NA non-coding downstream 180416 8033925 ~ 8035373 (+)
LOC117599010 NA non-coding downstream 266943 8120452 ~ 8143237 (+)
G207610 NA non-coding downstream 304435 8157944 ~ 8158181 (+)
G207616 NA non-coding downstream 347783 8201292 ~ 8201592 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 531226 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 721224 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 750976 7084441 ~ 7102215 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other upstream 1592334 6252344 ~ 6260857 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other upstream 1658227 6180096 ~ 6194964 (+)
trnas-cga_1 NA other downstream 154677 8008186 ~ 8008411 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 1096957 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 1208054 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 2090797 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 2495893 10349402 ~ 10781459 (+)

Expression


Co-expression Network