trnas-cga_1


Basic Information

Item Value
gene id trnas-cga_1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8008186 ~ 8008411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245778
CCGAGAGGTTAAGGCGTTGGACTCGAAATCCAATGGGGTTTCCCCGCGCAGGTTCGAACCCTGCTCGCAGCGTgtcagtcgtggcctaatgatTAGCagctcggacttgtaaccctgAAGGCCATGGGTTCaagttaaatgcagagcacaaattctgagtatgggtcaccatacttggccacaaatCACTTCATTTCACTACATCATATGGCCAAA
>trnas-cga_1
GCTGCGATGGCCGAGAGGTTAAGGCGTTGGACTCGAAATCCAATGGGGTTTCCCCGCGCAGGTTCGAACCCTGCTCGCAGCG

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU245778 True 216 lncRNA 0.50 1 8008196 8008411
trnas-cga_1 False 82 tRNA 0.50 1 8008186 8008267

Neighbor

gene id symbol gene type direction distance location
tcap LOC108261065,LOC108413611,LOC107684635 coding upstream 52941 7953794 ~ 7955245 (+)
syngr1a syngr1a,LOC108261039,LOC108413620 coding upstream 57938 7933366 ~ 7950248 (+)
fam171a2a fam171a2,LOC108258145 coding upstream 76675 7884149 ~ 7931511 (+)
itga2b itga2b coding upstream 128122 7860224 ~ 7880064 (+)
LOC113528203 adcy10 coding upstream 510653 7483781 ~ 7497533 (+)
itgb3a LOC108279461,LOC108413591 coding downstream 2122 8010533 ~ 8027891 (+)
mettl2a LOC108279476 coding downstream 23270 8031681 ~ 8042803 (+)
tlk2 tlk2,LOC108413572,LOC107689079,LOC107567040,LOC107660745,LOC107552467 coding downstream 39015 8047426 ~ 8062595 (+)
mrc2 mrc2 coding downstream 62303 8070714 ~ 8114585 (+)
vat1 vat1,LOC108413532,LOC107567018 coding downstream 155432 8163843 ~ 8200783 (+)
G207483 NA non-coding upstream 152297 7855431 ~ 7855889 (+)
LOC113528563 NA non-coding upstream 316517 7686051 ~ 7691669 (+)
G207309 NA non-coding upstream 440373 7564303 ~ 7567813 (+)
G207158 NA non-coding upstream 479448 7444823 ~ 7528738 (+)
G207157 NA non-coding upstream 564433 7443069 ~ 7443753 (+)
G207570 NA non-coding downstream 25514 8033925 ~ 8035373 (+)
LOC117599010 NA non-coding downstream 112041 8120452 ~ 8143237 (+)
G207610 NA non-coding downstream 149533 8157944 ~ 8158181 (+)
G207616 NA non-coding downstream 192881 8201292 ~ 8201592 (+)
LOC113528504 NA non-coding downstream 200887 8209298 ~ 8209867 (+)
G207480 LOC107834952 other upstream 154677 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 686221 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 876219 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 905971 7084441 ~ 7102215 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other upstream 1747329 6252344 ~ 6260857 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 942055 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 1053152 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1935895 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 2340991 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 3271669 11280080 ~ 11388020 (+)

Expression


Co-expression Network