G207653 (mrc2)


Basic Information

Item Value
gene id G207653
gene name mrc2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8110658 ~ 8114574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245906
ATAGCCAACATATACTTTATTCATTTcatatgaaacaaacaaaaaatgattcaaaacaAGTAGACAACAGGTGCATATTGGAAAATCAGAAAACTGTTCTGACAAACAATCAAGTCAATTCAGCTACTCCTtctgacaaaaagaaagaaagaaaaaaacccaacattTTGATTTCCTCAAATCAAACCCAACACTAGTGAGCCACTGAAGTCAGCTATTGGTTCATCCAAATGCAGAATCACATTAAACTAAAGTCATTTTTTAGCCTCTACTGCAAGGTCATAACAGTATATGACAGGGTCAGTAACTGTGTCACAACCTCAGCTATTCTGTGGTCATGTACAATGCCATTTTGTCACTTGTTTCATGCGTGACATTACAGACAGTGAGTGCACATATGGTTATGAGCCATCAGTATCGCTATGTGCTTATTtgtgtcacattttttttacttgcttaATTTCCATTACTACCAACTAACTGTGGTCAATCTGATTAAAGCAAATGGATCACAACAGGGCCAGCCAAATCCCAAGTGAACTAAGTGGCTGTTATGGGCCCCACAGCCAGCAGGGGGCCTCATCACAGGCTGGGAAAAATAAGCTACTAACAACAGTATGTTAATacaattatgtaaaaaatgttgacaagtaaggaacaaaacacgaTGGCGTGATGTGGATTGATGCGAAAggggattattttcttataatatcatgtgtttcattcctcttataccacaacaatttgcaatgaatgtaatttttatttatgaatttattaatgaatgttgTATTGTTCTTTTTaactgtatacatttaaatttaatgtatttgaacATCCCAAGGACGTTATTTCCTGCtaacacttacattatagcagctttaaagagctgttccctcgccagcctctattcttctcttccttgaagacaaaaaatgttgtgttgcttgttgtgttactgagaaaccagaaagtgcatatcttctgtcctgaagactttcccatggtggaaaacttactgactgttacaaatccCTGACACTTTCATtaatgttcaataaatgtctttatccatttattattagcctcaGATTATCGTAGTTGTCTGCCTTACAAGTGgcagaaaaacaacagaaactgttgtttttatgttatataaCAACAGCTTTTTTATAATCTATTATAATCTAtgtattagccttagattaagTGGAGCATTGACCACACAAGTACCTGTGAATAAGATGTTAGCAACCTTTTTAAGCTAGCTATAAAAGACTAGCAATGGTGGTTAGCTAGCCAGCTCATGTccatgtggaaaaacaaaaaatgatgtcCTGGAATTAAGCCAAATtcagtaaaagaaataaaatatcaacCAGAAGCATGTTTTCTTGCCATACTGAATTTCTAGGCCTTATGAGTTTGTTTGCTAATATTAGCCACAGAAATTTGTGCTTAAATGTTCTAGATTTTACTATTTTGGTACTACAAAATCAGACATGCTTTAGCTGATCTTGGTATAGTGAATTGTTTCAAATAAGCGTTAAACAAGACACTGCCATCTTGCTGCTGCCATCGTCTTCTCTGACTATTCATGTGTGTTCTATAGTTAAATTgctgggagaaaaaaatcaactgtcTCAGACAGTGGTGGCTgaaaatttgaataaaacaaattataaaactatataaatgaTGTACTTTTTTAGCAACTTGATTTTTACTAgttttgcaaataaaatatcatgTCCATATCCGATCACATAGCCTATGTTCCCTGGtcaaaagtggagaaaatgtatGCATGAGTGTTCTGGAAAGGATTATTGCAAAATGCTGAAACATTTTATGGAATGGGAGGCTATAAAAAAAACCAGAGCGCACTGAGACTCGCCTACGTGGCAGTTGCTCTGCTGAGGAAATGGCCTTTTATCAAATTCTGAAAGTGTAGTATGACTCAGGATGACTGCATCATGACCGAACCTCCAACAGTGAACAATACCACGGCAGGAgctgtacattttctttatctttatgCACAATACTGGCCACTTATTGTGGATGCATACATAGCATATCCATTGCGATGAAATGCTCATAAAAGATCTATTTCTGTGAAACCACAGACTTCACTTACTGTaatgacacacactgtccaCTTGAGGCACTGCAGAGACTTTTCAGCTTGAAATTGCACATATCTTCTGAGTCCTGTTCACCTAAAGGCTCTTTTGCCCCTTCGTTCCCTTCAGGACAactccctctgtctttctgtctatttcactgtctcgctctctccttcgctgtctctctatctttctccttcactgtctctctgtgtctttttctctctctctctcattcctcagAAGCTGAAATTGGTTCCAGACCTGATCCACTTGCTGACTCGACATTCCACAGTTGGCCGCAGCACCTTTTCAACCCCATGTCTTTGccaaaaggagagagagaaaaaaaataaaggaaaaaatgcaACCCCACAGAATCTGAAACCCTTTAAGAATGTTAGggagacaaaaaagaaacagaaatggcCTTAAAGATAAAGAATTGCTTGAATCTATGAATTTATGAATCAATATTTCATGactaaaaaagattaaaaaaaaaaaaaaagtcagcaagcTTGTCGCTGTAGTTGGTGCCACATTCCTCGGATCATTTCTGTAAACTTTCAAAAGCCCTCATTTACTAAAcagcactcaaaaaaaaaaaagaagaaaagatacCAAATTGAGCCGAGCACCAGCTAATCTCAGCAGCGCAGTTGAGCTTTAACTAGCACCAGCCATGCTGAAAAGACCTTTAAATTACTCTCATTCTTTAAGCCACACAGCTCATTTCTACCCCCAGcgttctctccatgtctctgtcTCGCCTCTGCATTGTCAAACGCTCCACATGCTATCAATTCCTTTCATCTCTAATCACTATGATTATCACATCCAGACAGCACCCAACATTcagctggagagagaaagagaaacagagaaagcaaAGAGGTGAGAGAAAAGCGATATGCAAGGgggaaaaggggggaaaaatccATAGGCAGATGATTTGTGAACTCAAAAATGAATTCTCCTTTTAGCTGGAGCTAATGAAAAAGACGAATAAAGTAAAAATTGAACCACATCACAGTCTGCAAAAATACTGCTATGGTATAACACTTTTGTACAGATTGTGcggttgtgtgtgcatgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTTTTGGGTAGACTTTTTTGTAATGCTAAAAATATGATGAACCAGATGGTAACTACGGAACATATACACGGTTATAAACTGAATTTCCAAAAAGAGTTAATGTGAAGAATAAAAAGAACACTATGTGCATATCAGCCACTTCGAGCCGATTTTTAAAACTggtggattctgattggttggtgtACAGGTATGACGCAACAGTCCAAATAGGGGTGGAGTTCCACCTTCATGTTTGATTGACATCTGCTGCGCTCCACACAGCTTTCTAAATGTCACCACATTAAAAAccctcaaaacaaaacaaaacaaaacatgaagtCAGTTCAGTTTAGTCCTCGTGTGTGCAGGCCAGTTTTCTGAGTCATTCATAATGATCTATCATCCTTCATTATTCCCCTTGCTCGTTTAGCTCCATGTCCGACACCAGGATGTTTTTCTCTGCCTCTTCAGATGGGGAGAGGTTAGTGCGACTGTAACGAGCGCCTTCATAGGATCCGGCAGAGCCAGAGCTCCTCCTGCGATACAGATAAACTCCGCCCACAATGAGGGCAATCAGGACCAGGACAGCCAGCAGAATAAGAACGAGAGCAGGAAGGTGATCTACAC

Function

symbol description
mrc2 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MRC2 (mannose receptor C type 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245906 True 3881 lncRNA 0.38 2 8110658 8114574

Neighbor

gene id symbol gene type direction distance location
rprml LOC108261071 coding downstream 124836 7984469 ~ 7985822 (-)
LOC113528501 cq072 coding downstream 142668 7961774 ~ 7967990 (-)
phb phb,LOC107661032 coding downstream 630402 7473512 ~ 7480256 (-)
znf652 znf652,LOC108258819,LOC106607259 coding downstream 642823 7446563 ~ 7467835 (-)
phospho1 phospho1 coding downstream 673477 7431991 ~ 7437181 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding upstream 15793 8130367 ~ 8155274 (-)
si:busm1-163l24.4 LOC108277007 coding upstream 87191 8201765 ~ 8203353 (-)
si:busm1-163l24.3 LOC108276929 coding upstream 89486 8204060 ~ 8209776 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding upstream 111723 8226297 ~ 8236622 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding upstream 123576 8238150 ~ 8248789 (-)
G207571 NA non-coding downstream 73810 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 81209 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 162487 7943678 ~ 7948171 (-)
G207254 NA non-coding downstream 797003 7312082 ~ 7313655 (-)
G207205 cacnb1,LOC108413880 non-coding downstream 848545 7255625 ~ 7262113 (-)
G207650 NA non-coding upstream 61784 8176358 ~ 8200778 (-)
G207732 NA non-coding upstream 239136 8353710 ~ 8358074 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 317424 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 378241 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 419929 8534503 ~ 8534712 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 405166 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 679546 7425717 ~ 7431112 (-)
G207231 spsb3 other downstream 788696 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 1384493 6646058 ~ 6726165 (-)
G206604 NA other downstream 1915662 6126910 ~ 6194996 (-)
slc4a1a LOC108279353 other upstream 135311 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 165193 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 169900 8284474 ~ 8284592 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 593380 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 998392 9112966 ~ 9142871 (-)

Expression


Co-expression Network