selenow2a (mien1,sepw2a,LOC107566883,LOC107755209)


Basic Information

Item Value
gene id selenow2a
gene name mien1,sepw2a,LOC107566883,LOC107755209
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8279767 ~ 8289808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245974
TGAAGCGCAAAATTGCTGTGTTAACTTCAAACGACAGGAAGTGAATCTGAGAGCTGTAGTCGAGGTGTGGTGATGGGTGTACAAATCCAAGTGGAATATTGtGGCGGATGAGGCTACGAGCCCCGCTATCAGGAGCTCAAGCGAGTCGTCGTCGCTGAGTTTCCTGAGGCGGAGGTGTCCGGCTTCGTCGGCAGACAAGGGTGCTTTGAGATTCAGATCAATGGACAGCTAGTTTTCTCAAAGCTAGAAACCAGTGGTTTTCCCTATGAAGATGACGTCATGGAGGCCATCCAGAAAGCTCACGAAGGCAAACCAGTGGAGAAGATCACCAAGAGCCGCCCACCTTGTGTCATACTCTAACTCCTAAGCTTTTGATTACCTCAGAAACTAAGcaatgtaactgtgtgtaatggCTCCTCAGATGTCTCCTTTCGCTTCTGCTTCTAACGAGGTGTTTTTGGACTTAAATGATTGGTGTAGCTAAAAACTAAAAGTTACACTATGAAGCTCTTAGTCCAGTCACTGTCAAACCTGGAGCAGAGACGAAGGGGAGACATCCAAGTGTGCATTAAAGAAGTATAGATATGTGTAtgtcaaaagagaaaaaaataggcTTTCTAACAATATTTGAAGTAAAATTTAAcactgtcagtttttttttttttttttgtaatttacagTTATGAGTTTTAGACAGCTTTGTTGTAAAGTCTCAGTTAATGGAGTCTTGGAAGACACCTTAACGTCATATTACTGTACTAAAATCAGACTTGAACCTTCTACCTTCTTTTTGCTGCCTTGATTCTTCAATTACAGCTATTTAATTatagatgataatataaaataagggCACATTAATGCCCATGCTAGAGTAATAATTATAGTTGAGAtctgaaataaaagtaaacatttaGAACTTTGTTAACGTTTAACAAATCACACAAAGCAGATTTGTTATCCTGGCTAGGATGTTGAAATGGAtttttcatcatgtttcctGATTTTGTAAGACTATTTTCTAGTCAAACAAAACCACTTTGCTGCTTATGTGgactatttattttatctgcTGTGTACCTTTACCATTACAATTAATAAGTTACAGTTAGGATGTTCTTATCAGGGACAGAGGTAACTCATGAATGTAGTTCTTGTCCATTCTTGTCAGGCCTGTTTCGTCTGTGCAAGCTGTGTAACTCAACTAATGTTTTGAAATCTCTATAACATCTTTGTCAAACAAAACCATAAATGGTGGACTGCTACTGTGTTCGACATCTGCTATTGCGTATGACATTGGGCCATTGTTTTTGGGACTGATTGCACAACGACAGCATCACAGagcaaataatattaatgtctAACTTTGAAGCAGCTTAAACACAGGTTGTCTTATCTCTTACCACCTCAGACTCTAGCCCAGATTGTCCTTTTACCTTTCCAGCTCATTGAATCATCCAcatgtggaagccattttgccTCAAAAAACTGAGTTTTTCCCCACCCTGATTCtcaattaattttgtttatgcCAAAGTTCCAAATGTCATAACCTGCAACATGCTTGAATAAAAATTTGTTGAAAGTTGG
>TU245977
GCAGCTGTGTCATTAGAGAGCAGGAAGCAGCTGCGAGCGGAGTGAACACACCGAGACGCGAAATGGTAGTGACAGTAAGAGTCGAATACTGTGGAAGCTGAGGCTATGACCGGCGCTTCATAAGCCTGAAGCGCGCCATCATAGCCAAAGTTCCAGACGCAGTAGTGAACGGGACTGTGGGGAGGAGATCATGCTTCGAGATTGAGATCGATGGCCATCTTGTGTTCTCCAAATTAGAGATGGGAGGATTTCCTTATGAAGCCGATGTGGTGGCTGCGGTTTTCCAGGCTCAGAATGGCAAGCCCGAGAAGCTCACTAGAAGCTCTAAAGAGTGTGTCATCTCCTAACCTGCTGACTTTTAGCCCCTGCCCACTGCTTCTATAACCACATCTCGTAATGTTTCGTAAGATTTATGTCACTCGGACTGTTTAGATTTTCAGTTCCCCTtgtgtcttattttttttctgctcctgcTCTGGGCTTTTTGGACTTACATGATTGCTGTAGCTGAAAATATGAAAGGTTATGGTATGAAGCCTACATTCCAAAGCCCTCTATTGTAGGAGCAGAGAGACAAAAGGACACTATGAGGGACAGGGCAGTGGGATTGGCAGGACTTAATTCCTTCATGTAATCCTACATTAAATTTGCTTCCCCATCCTATGCAAACCATGTGCAAATGTCTTACTCTTTACCTGCACGCTT
>XM_026916915.2
ACTAATATCAGTGGACGAGCCATTTGATATCCCGCCTCTGATGAAGCGCAAAATTGCTGTGTTAACTTCAAACGACAGGAAGTGAATCTGAGAGCTGTAGTCGAGGTGTGGTGATGGGTGTACAAATCCAAGTGGAATATTGtGGCGGATGAGGCTACGAGCCCCGCTATCAGGAGCTCAAGCGAGTCGTCGTCGCTGAGTTTCCTGAGGCGGAGGTGTCCGGCTTCGTCGGCAGACAAGGGTGCTTTGAGATTCAGATCAATGGACAGCTAGTTTTCTCAAAGCTAGAAACCAGTGGTTTTCCCTATGAAGATGACGTCATGGAGGCCATCCAGAAAGCTCACGAAGGCAAACCAGTGGAGAAGATCACCAAGAGCCGCCCACCTTGTGTCATACTCTAACTCCTAAGCTTTTGATTACCTCAGAAACTAAGcaatgtaactgtgtgtaatggCTCCTCAGATGTCTCCTTTCGCTTCTGCTTCTAACGAGGTGTTTTTGGACTTAAATGATTGGTGTAGCTAAAAACTAAAAGTTACACTATGAAGCTCTTAGTCCAGTCACTGTCAAACCTGGAGCAGAGACGAAGGGGAGACATCCAAGTGTGCATTAAAGAAGTATAGATATGTGTAtgtcaaaagagaaaaaaataggcTTTCTAACAATATTTGAAGTAAAATTTAAcactgtcagtttttttttttttttttgtaatttacagTTATGAGTTTTAGACAGCTTTGTTGTAAAGTCTCAGTTAATGGAGTCTTGGAAGACACCTTAACGTCATATTACTGTACTAAAATCAGACTTGAACCTTCTACCTTCTTTTTGCTGCCTTGATTCTTCAATTACAGCTATTTAATTatagatgataatataaaataagggCACATTAATGCCCATGCTAGAGTAATAATTATAGTTGAGAtctgaaataaaagtaaacatttaGAACTTTGTTAACGTTTAACAAATCACACAAAGCAGATTTGTTATCCTGGCTAGGATGTTGAAATGGAtttttcatcatgtttcctGATTTTGTAAGACTATTTTCTAGTCAAACAAAACCACTTTGCTGCTTATGTGgactatttattttatctgcTGTGTACCTTTACCATTACAATTAATAAGTTACAGTTAGGATGTTCTTATCAGGGACAGAGGTAACTCATGAATGTAGTTCTTGTCCATTCTTGTCAGGCCTGTTTCGTCTGTGCAAGCTGTGTAACTCAACTAATGTTTTGAAATCTCTATAACATCTTTGTCAAACAAAACCATAAATGGTGGACTGCTACTGTGTTCGACATCTGCTATTGCGTATGACATTGGGCCATTGTTTTTGGGACTGATTGCACAACGACAGCATCACAGagcaaataatattaatgtctAACTTTGAAGCAGCTTAAACACAGGTTGTCTTATCTCTTACCACCTCAGACTCTAGCCCAGATTGTCCTTTTACCTTTCCAGCTCATTGAATCATCCAcatgtggaagccattttgccTCAAAAAACTGAGTTTTTCCCCACCCTGATTCtcaattaattttgtttatgcCAAAGTTCCAAATGTCATAACCTGCAACATGCTTGAATAAAAATTTGTTGAAAGTTGG
>XM_026916916.2
ACTAATATCAGTGGACGAGCCATTTGATATCCCGCCTCTGATGAAGCGCAAAATTGCTGTGTTAACTTCAAACGACAGGAAGTGAATCTGAGAGCTGTAGTCGAGGTGTGGTGATGGGTGTACAAATCCAAGTGGAATATTGtGGCGGATGAGGCTACGAGCCCCGCTATCAGGAGCTCAAGCGAGTCGTCGTCGCTGAGTTTCCTGAGGCGGAGGTGTCCGGCTTCGTCGGCAGACAAGGGTGCTTTGAGATTCAGATCAATGGACAGCTAGTTTTCTCAAAGCTAGAAACCAGTGGTTTTCCCTATGAAGATGACGTGGTGGCTGCGGTTTTCCAGGCTCAGAATGGCAAGCCCGAGAAGCTCACTAGAAGCTCTAAAGAGTGTGTCATCTCCTAACCTGCTGACTTTTAGCCCCTGCCCACTGCTTCTATAACCACATCTCGTAATGTTTCGTAAGATTTATGTCACTCGGACTGTTTAGATTTTCAGTTCCCCTtgtgtcttattttttttctgctcctgcTCTGGGCTTTTTGGACTTACATGATTGCTGTAGCTGAAAATATGAAAGGTTATGGTATGAAGCCTACATTCCAAAGCCCTCTATTGTAGGAGCAGAGAGACAAAAGGACACTATGAGGGACAGGGCAGTGGGATTGGCAGGACTTAATTCCTTCATGTAATCCTACATTAAATTTGCTTCCCCATCCTATGCAAACCATGTGCAAATGTCTTACTCTTTACCTGCACGCTTCAAAGTGAATAAAGATGcagttatttcttttctttgtctttctttctttattttaaacatattttagttttaaataattattttcctattctATGAAATCTCAAATCTAAATATCTTCGTCATGTAAGAAGTAATAATGAATGATGAAAATCCTGAATTGttcatataaatgaataaatcgaTGCATGTAACTTCAAA

Function

symbol description
mien1 Involved in negative regulation of apoptotic process; positive regulation of cell migration; and positive regulation of filopodium assembly. Located in several cellular components, including centriolar satellite; cytosol; and nucleoplasm. Is intrinsic component of the cytoplasmic side of the plasma membrane.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: migration and invasion enhancer 1-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG:

id description
K07401 K07401; selenoprotein W-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU245974 False 1587 lncRNA 0.39 4 8285149 8289767
TU245977 False 705 lncRNA 0.47 4 8279965 8282317
XM_026916915.2 True 1628 mRNA 0.39 4 8285149 8289808
XM_026916916.2 False 954 mRNA 0.42 4 8279767 8289808

Neighbor

gene id symbol gene type direction distance location
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 30978 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 43145 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 69991 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 76414 8201765 ~ 8203353 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 124493 8130367 ~ 8155274 (-)
spop spop,LOC107754841,LOC100710366 coding upstream 276963 8566771 ~ 8660121 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 426516 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 440157 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 457901 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 474871 8764679 ~ 8779068 (-)
G207650 NA non-coding downstream 78989 8176358 ~ 8200778 (-)
G207653 mrc2 non-coding downstream 165193 8110658 ~ 8114574 (-)
G207571 NA non-coding downstream 242919 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 250318 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 331596 7943678 ~ 7948171 (-)
G207732 NA non-coding upstream 63902 8353710 ~ 8358074 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 142190 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 203007 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 244695 8534503 ~ 8534712 (-)
G208016 NA non-coding upstream 284827 8574635 ~ 8649363 (-)
slc4a1a LOC108279353 other downstream 12129 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 574275 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 848655 7425717 ~ 7431112 (-)
G207231 spsb3 other downstream 957805 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 1553602 6646058 ~ 6726165 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 418146 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 823158 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 906688 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 1119996 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 1174523 9464331 ~ 9474478 (-)

Expression


Co-expression Network