G207732


Basic Information

Item Value
gene id G207732
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8353710 ~ 8358074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU245988
AATCATATTTGGTTTTATTCTATTAGataactaatttgtttcatttgtcaTTTACATAAGTGTACTGTCATAACAACTATATGAAATTTGTCACATTTACACAATGCATTGGGGAATATGGGCTAAGTACAATTAACATTCATCCCCATTAGGGGAGCAGGGACTGATAGAGTGAATTCTCCCTTGAGAATCACCGTTGACATCTTCATCTAAGCATATGGCCTCTTAAGAGTGTCTCTGTGTCCATCTAAAGCCGGGTTTTAATGGATGTGTCCATAGTTTTGGCTTGCCAAACACAAACTCTCATCAAGTTTTGTCACTTGTCACTGATTTGATATGCAGTCAAGACTAGATTTTTGTTGTATTATCCTGTAAATGCATAGAATGGTATAATAATAACACAAGAAAGTGACAGTAGATGATAGTTTCTGCATCTTACTTCATGATACTAAGAATATATAGCATATGTAGCTTGTGAATGTTCAAGCCCACTTCTGTTAAACTTTAACCTGGATGTAAATTTATTTGGATTATGATGTAATGTCCTGTAACCATCATGACCATCTTCTCTAGACTAAAGACCCAATACAATGTAGAAAGCATACATACAACTTACATTTTATACAGATCagacataaagaaaaaatagagCAAAGCGATGCAAAATTGAACTTTATGAATGTAGCTCAAAGACACCTGACGTAGTCCACAGGCACTTTGTGGTGCTGGATACTCTTTGAGTGTACTAATTCAATCAGTTTAAGTGCTACAAAAGTAAACTGTCTTTATAAAATTCTGCTCTGAAAAGGTAATTCTATCAAGAAACGAAACCATGTTTTCTATAAAAGAATAGGACTGGATAAAAATAGAACTGAACACAAGAGGACAAAGTTAGCTAGCGCAACACATTTTGCATATGACTATTAATCACTAGGCTTGTGTACATTCTATACTCGTCCTTGGGTGATAAATGGAAGTAAAAGCTGGTTATTGAGTGAAGACTTGACACAGAGATGCTGAATATAGAAGTGCTTCATTGTGCTGTCGGAGCAGTTCATAGAAGAAAATCCATGTTAGCTTCTGTTCACTGTACTGTGATACTAGGAACACTTTATTATCCACTCAATCACTTGTATTCCTTTTTAATGGTATGAAAATATCAGTACTCTGGAGACTAAACTGAAGGAACATCATGTCCTGCAAAACTGAGAGcttctctttcatttctctgttCATGCAAAGATGACAGCTGTCTTCTGTTGCCTTATGTGTTTGCAGAGAAAGcaatcaagagaaaaaaaaaacaataaagcgacttgtctttctttttcacctGTAAGTGCTTTCAGCAAAATGGTGGAGTAGAGCTCAATGAGTGAGGCGATGGAGccataaaatgcattaaactCCAACACAGCGGCTAGCTGCAGAGGCCAATGATACGCTCCATAGAATGATTTAATGGAAAGCACCCAGCTGAGTGAGGAGGACGGCTCTGAACTATAATGCGCAAGAACAGACTCTCTATTGCTCTGCCAGAAGGAGGAGAATACTGACTTCAGCTTATCACGCCAAGCTGAAGCTCGTATTAGCCAAGTGAAGCGAAACAAAGGAGCAAAGCAATAAGGCAATGGTACATGCCAGGTTCTGTCAAACTAATATCCAACCATGAGGGCATCTTTCAGCTGCTCCAAGCCCAATGCTACAGAAATAAGTAAATGTACAGTCGTTTCAGTATGCAATACCTTTAATGTCAGCTATTTACATTAGATAAGCCTgagtaaaatagaaaaaagtgtCAATACTGTGCTCGTTAAACAAAGTTTGATCAATACTATAGTGGTTATTTATTGCAGTTTGAATCCCGCTGCCATTCCTCAGTTTGTGCCCAGTCACCTGAGAGTGATGCGCTAGATTACAAGCTCCCATTCTGGATTGTGTAGTAAACTACAAAGCCATGCAGCAGACACAGTAAAGCTatacgtgtgcgtgtgtgctcAATGTATTTCTATGCCACTACCGCTCATTAGGTTAATGAAGGAAGGATGTAGTCCTTGGGGGGGGAAGCAGATGAAATTGGTTGGTTTTGGTTGTTCTGCTGTGGTGTTGGATGGTATGTGAGTGTTTGCCCACATTCACACTACTCATTCTTGATTGCTGAACTCTTTCTTTCCTGTAACTTCTTGGTGCACCCCCAGGTCACCTTGAAGTGATTTGATAAgtatgtgtagacttttttattcACTCACTTACTCACCGACTGCTAAGCTACTGTTGAAATacacatgaaattaaattagtTGTTTGGGACATCCACACACAAGGTGGCGCTATACATCTAAAACATGGACCAGTAATTCATCAGTACacttgaagaagaagaagaagcaaggTACTCTGTTGCAACGTTAGCTTTTCCCATGGGTACTATAAAAGAAAGTTCTGCATTTGCGCCATTCTCACTTTCTttgctgtgattggctagtagATTTTACTTATAATCAATCCACCAATTAGAGAGTTAGTCTAACTGGAATTtgtctgataggaaaacactaTGTAGACAGGGTTCTACATAATACCTGATGGTTTCTCCAGAGAAACCTTCTGTTGCAGTGCTCTACACAGAACATTTGGGGGGCCCCAAAAGGGACAAACCGAAGAACCTTTAAGCGTGCTGGTTAGACCCATTTTTTAACAGCATTACCACCAGGACAGTGATACAGCACTTACAGCCAGTCATAACCACTCATAGTCCAATGATGCTGAGCTGGCTATGGAACGCAACCACATTAGAGCATCTAATGGACCCCAGTTTACCACATGTGGGCCACTCACCAACCACGGCATGAATCATTTACCCATGGTTCTCAAAGCTGAGTTAGTCAGCCTTGGGGTGAAACTCAGAGAGGTAAATGGCGAACAGAAGTCTGAAGATGAATCATTGAATATTGAGTCTGGGAATTACACTggtgatgtgtatgtgtatgaaagGAGAGGGTAATGTATTAAGCCGACTCCCTCTGCTGTGCAGAATTGCAGAATTGCATCCAACTGACCCGCTATAGTTTGCTCTCAGTGAAATGAGAACCATACAACTCAGCACTGTAACATAAACCTGGGTGGAAGTGAGGTAATAGCAGAGGGAATACAATGCACttacagtatgtatgtgtggAGGAAACGGAGATTGTATGTGGGTATATCAGAAAAAGATAGCtgcttagagagagagagagagagagagagagggcgtgCTAAGTATAGATGCAAGTCATTACAAACATAAAGGTCAGTAAATGTCACCTTTTCAAGATGTCGCCTACACTCGCTGATACAGAATGAGCTTCACTTCATGAACCACCATTAGGGGTGAAAACAGCACCACTAACAGGCCTGGACTTAAAGGGCAACCTTTCAAATCTCTGTACACTACTTTGAAGGAAGGAATCTGACCAACACCTCAAAGACATGCTTTTTAATCCTATTTTCTAGGCAGGGGTAAGAATAAAGAATATTAAGAACAAAGACTCAAAATCCAAGCAAAGGAGGTTAGTGCGATTGAGGCATTCTTGTGGAGTCCGTATATGGCCTATATGTGTCATAGGTCCAGCTCTAGATCTCTTATTCATCTGAGAGTTTGGTGGGATCAGATCATCAGGAGCAGGAGGCAATGGCTTCAATCAGTCTGAAAAACAGACCTGCTTTCTGAGCTCTAAGAGTGTCTTTAAAACATGAAGTGGCTTTGCTTCGGGTTGGTGATCTTCAGTTGGTTTGAGTTGACTACTTTATGGATTAGTTTGTTAGGGGAACAAATGCATggtttacatacatatattttggAGTATACATCATTCATAATACATTGAAGAATGTTATAAGGCCATTTAGATTTGGTTGGTGGTGTTAAATGAGCTGTTTTGTTAGATGCCAGTGGTATTATGAAGCCCAATTTAGATCAAAGTGTCATTACAGATGACAACTGCTGGTATGATCTGAACTGGGTTTCAGCCTGTAAGGTTTTGACCTTGGAGTATGTGGATAATATAAGGGCATTTCTGTAGATGTGAAGATTGTGGCCCAGAATATCTGAGTTGCTGAAGTTCTCCAAGCCCACAGGACCCAGTGCATCAGGGAAATGTCCATACTGGGTTTAATAAGATGGCTGATGGCCATAGTTAGCTAATGACCACCAGAACAACATGCCACTCTCCTCCTCGCTCTTCCCACCCCTCTGCTCTCACTGGAacttcttctccttcatctgCTTGATGGTGTCACCTCCTTCGGCTGCTCCCTTCATGCCTGTGATGGCGGAGAGTCTGACTGAGCCCCTCCATCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245988 True 4345 lncRNA 0.41 2 8353710 8358074

Neighbor

gene id symbol gene type direction distance location
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 104921 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 117088 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 143934 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 150357 8201765 ~ 8203353 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 198436 8130367 ~ 8155274 (-)
spop spop,LOC107754841,LOC100710366 coding upstream 208697 8566771 ~ 8660121 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 358250 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 371891 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 389635 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 406605 8764679 ~ 8779068 (-)
G207650 NA non-coding downstream 152932 8176358 ~ 8200778 (-)
G207653 mrc2 non-coding downstream 239136 8110658 ~ 8114574 (-)
G207571 NA non-coding downstream 316862 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 324261 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 405539 7943678 ~ 7948171 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 73924 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 134741 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 176429 8534503 ~ 8534712 (-)
G208016 NA non-coding upstream 216561 8574635 ~ 8649363 (-)
G208062 NA non-coding upstream 502489 8860563 ~ 8873502 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 63902 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 69118 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 86072 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 648218 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 922598 7425717 ~ 7431112 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 349880 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 754892 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 838422 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 1051730 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 1106257 9464331 ~ 9474478 (-)

Expression


Co-expression Network