G208004


Basic Information

Item Value
gene id G208004
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8851803 ~ 8874292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246318
TATggatccatggacccaacctgcCTGTCAATACTGTTATACTGATTAATCATCGCTTGAaagccacagcctatttgagtactgttgctgaccatgtgcatcccttcatggccacaagttaccatcttctaatggttacatccagcatgataatgcaccatttCACAAAGCAAAcattgtctcaaactggtttcatgaacatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246318 True 205 lncRNA 0.42 2 8851803 8874292

Neighbor

gene id symbol gene type direction distance location
LOC113528522 nxph3,LOC107660556,LOC105012985,LOC107754835,LOC107590800,LOC107710880,LOC107568907 coding upstream 366859 8454003 ~ 8484944 (+)
ngfra ngfr coding upstream 493652 8311016 ~ 8358151 (+)
tmub2 tmub2,LOC107708558,LOC107660620,LOC107566939,LOC107571926 coding upstream 625798 8219525 ~ 8226005 (+)
asb16 asb16 coding upstream 633452 8212029 ~ 8218351 (+)
vat1 vat1,LOC108413532,LOC107567018 coding upstream 651020 8163843 ~ 8200783 (+)
LOC113528197 NA coding downstream 1940 8876232 ~ 8882985 (+)
LOC113528067 NA coding downstream 13113 8887405 ~ 8893797 (+)
LOC113528069 NA coding downstream 22326 8896618 ~ 8902677 (+)
LOC113528196 NA coding downstream 28436 8902728 ~ 8904664 (+)
LOC113528195 NA coding downstream 35378 8909670 ~ 8915323 (+)
G207932 NA non-coding upstream 46370 8804488 ~ 8805433 (+)
LOC113528294 zwi non-coding upstream 79327 8752715 ~ 8772476 (+)
G207980 fam57b non-coding upstream 83898 8764526 ~ 8767905 (+)
G207927 NA non-coding upstream 134526 8692721 ~ 8717277 (+)
LOC113528543 NA non-coding upstream 317800 8499754 ~ 8534003 (+)
G208105 LOC107552474,LOC107739385,LOC107754658 non-coding downstream 107735 8982027 ~ 8983311 (+)
G208120 NA non-coding downstream 147883 9022175 ~ 9022947 (+)
G208122 NA non-coding downstream 152997 9027289 ~ 9027537 (+)
G208124 NA non-coding downstream 155379 9029671 ~ 9029875 (+)
G208125 NA non-coding downstream 157101 9031393 ~ 9031921 (+)
trnas-cga_1 NA other upstream 843392 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 998294 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 1529838 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1719836 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 1749588 7084441 ~ 7102215 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 76174 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 187271 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1070014 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 1475110 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 2405788 11280080 ~ 11388020 (+)

Expression


Co-expression Network