G208016


Basic Information

Item Value
gene id G208016
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8574635 ~ 8649363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246332
gtctccgtctgtgtgtctctgtgcgtgcgtgcgtgtgtgtgtggcctgagCTCATGTTGAACTGGCTGAATGAATGGCAGTGTTTCAGCGTAACCTGAGTTTCAGTGTAATAGATGTGAAAGCAGGAAATGGCGTATAAACACATGAGGATGAGGATATTCTCCTCTACTCCActcctcttccttcttctgTTTCCAGCTGCATTAATTCACTGCCAGTCTGGCAGCAGAagctgaaaacacacaacaagGAAAATAATCTCTCTGAAGAGAAACTTTTCGACACGGCTTGGACTATGTTCAGCTAACGGTAGCCTGCGTTTCCGACAGAGACTCAGGCGGAAGAAGACGTTCTCTGCAGGTGCTGGCGCAAATCGTGTTTTTGCTGAGTGTTGGCAGCTAGTTGAATACAcagtttctcacacacacacagacacacacagtgcttcgGTGTGCGTAGCGTTAGCCGTGTGAGacgagtgtgtttgtgaaacCTATGGGAGACAGCTGTGAGGAAGCCGTATGATCTCCAATCCGCCGACACTTCAGAAAGCCTGAGCGCTGGGAGACGGTCATCTGCAGACTCATTTGTGGAACAGAGCTCAAATGTCACCAAAACAGCATCACTAATAAGCTCTTCAGCTTTGAACAGACAAAAGGCAAGAAACATGCTTCTTGTTCCTCATAAGCTAGACTTTGAAGCTGATTTTACCAGTTAATTGTCACTTTGCAGGAGTTTTGAGCTTTAATTTGCTATAATGAATTGCAGTTTGAGGACGTTTGAATGCATCGTTAGATACAGGTTTGCCTCACTGTCTTAACGAAATGTTCAATGAAGCATGGGTATGATTTCTAGACGTTTTATTGTAAATCAGCAGATGTGAGATGTGTGTCTGAACAAGGAAGCGAGGAAGGTTTATTCGATATGTAAGTGCACAACACAGAAGAATCTATTTTCCCGTATATCATGTTTATACAAACATCTCAGTTAGCTGTTCATGTCTGGCCTTTTCATACGTCTCAAATGTCTCTTTGCCAAATGCAACACTTCAAAAAATAGCTCTAACAATATAGCTGCTAGCAGCGATTATGGGACCAAGCACTTTCTGGCCCCACCTCTTAGCGATGGAGGAATAGCAGAAGGCACTGAAACCAGCACTTGTTTGCAAGGAGATACTAAACCTGAAGGCAAAATGTCAAACAGttgctgagatatgccctcacttcctgtttggtgacttCTGAGTGAAAATCTGAGCaagttttgtttggtttggtctCATGATGTCATGATCCAGATTTCATGATTGGACAGAATTTGTCCAAACAAACTCAAAATGACTGACTTTCTGTTTGGCAAAACAAAAAGTCATCATCTTTCAGAGAACCAAGGAAAAAGATGGCTCACAAGCTGATGTTCACGAATTTGTGAAAATTGCTCCACGTTgcagcatttttaaataaagcttccTGTAACTGGCATCGTTTATAAGTGGAAAATTTTGACGTCACACACTACACAGTTTTTCCTTGTGGCGTAGTCAAGATTTTTATCTACTTTCCAGCTTCCACTAAATGCAGGCCATACAGTGCAGGTCCGAAACAGCAAACACGATACGGATGTAAACACAATAATGGTTGTAAACACGATACAACTCTTTGTGAAAGTGACAGCTGAAGGCGCGTtcgaccaaaaaaaaaaaaaaaaatatagcacCACCTAGAGGTGAATTTAGACATTCACGTTCATTCTATAGTCCCAATTTAATGATGAACTCACAAGATCTGTAGcacaaaagtgaaaaacagcacagtttttgggaaaaaaatgtaaaatggtgGAAATAATACTGTTGTCTACTCTTGAGCTCAGCATAACCCAAACAGTCAGTGCACAGTGGAATCTCATTTCTGTGTCATTCTCACTTGAAAACCATGTGGCAACACTGGTGACTCTGTGGTCCTTCAGCGTTGTCCAGGATGCATGAGGACGCATTAGTGTTGAGCCGCAAGTGTCCCTGTCCACCTCTGCATGTGTCATGAGTCAGTCTCCTCAATGTGTATGACTTCATTTACACTTGTACGCAGCGCTGACCAATTGAGACGCACATTAATACCTAGTGTtatcagtgtctctgtgtgtgtgtgtgtgtgtgtgtgtGAGTGTGTCTGAAACATAATGCTTCAGGAATTAGGAAGCAACATCCAAATGGAGCGGAGTCCTCCGTCTGTCGTATGTCCTTTGTTGTGCTACATATCCCATAATCCTGTGCTTTAGCTCTGGCACAGTGGTGGAAAACACTGAGATGAGGGAGCAGTTTGTGGACAAAtaagttgtttgtttttcagtttggaGAAATATGTGGTGCTTTATGTGGTACAGTCACTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246332 True 2390 lncRNA 0.43 2 8574635 8649363

Neighbor

gene id symbol gene type direction distance location
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 325846 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 338013 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 364859 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 371282 8201765 ~ 8203353 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 419361 8130367 ~ 8155274 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 66961 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 80602 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 98346 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 115316 8764679 ~ 8779068 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding upstream 134036 8783399 ~ 8793415 (-)
G207895 NA non-coding downstream 39923 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 81594 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 142374 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 216561 8353710 ~ 8358074 (-)
G207650 NA non-coding downstream 373857 8176358 ~ 8200778 (-)
G208062 NA non-coding upstream 211200 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 222613 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 306079 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 306503 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 307898 8957261 ~ 8958211 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 284827 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 290043 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 306997 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 869143 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 1143523 7425717 ~ 7431112 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 58591 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 463603 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 547133 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 760441 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 814968 9464331 ~ 9474478 (-)

Expression


Co-expression Network